Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3849 ATGTCGGATATTCACTTGGAAATGAAGGATAGGCAACGGTGGAGAGCGGAAGAGGATGCATTATTACGCGCTTATGTCAAACAGTACGGTCCTAGGGAATGGAACCTTGTATCTCAGCGCATGAACACGCCTCTTAATAGGGACGCAAAATCGTGTTTAGAAAGGTGGAAGAATTATCTCAAGCCAGGTATTAAGAAAGGATCTCTCACTGAGGAAGAACAACGCCTTGTCATTAGCCTTCAAGCAACACACGGAAACAAATGGAAGAAAATCGCCGCGCAAGTCCCTGGTCGCACTGCTAAGAGGTTAGGGAAGTGGTGGGAAGTATTCAAAGAGAAGCAACAAAGAGAAACAAAAGGTAGTATTAACAGAACCGTCGACCCGATTAACGATAGCAAGTACGAACATATACTCGAAAGTTTTGCCGAGAAACTAGTAAAAGAGAGACCTTCACCTTCGTTTGTCATGGCTGCATCCAACAGTTCATATCTGCATACCGATGCACCACCAACACCGGGATTGCTTCCTTCATGGCTTTCGAATTCCAACAATGCCGCACCTGTTAGGCCAAATTCACCATCAGTGACATTAAGCCTCTCTCCATCGACAGTTACAGCGCCTCCTCCGTGGATGCAGCAGCCCGTACGAGGACCAGACAACACGCCTCTTGTCCTTGGAAACGTAGCTCCTCATGGAGCTGTTCTATCTTACGGTGAAAACATGGTAATGTCTGAGTTGGTGGATTGCTGTAAGGAGTTGGAAGAAGTGCATCATGCATTAGCAGCACATAAGAAAGAGGCGGCGTGGAGGTTAAGCCGAGTGGAGCTGCAGTTGGAATCGGAGAAAGCTAGTCGAAGAAGGGAGAAGATGGAGGAAATTGAAGCGAAGATAAAAGCTTTAAGGGAGGAACAAGCGGTTGCGTTGGATAGAATTGAAGGAGAATATAAGGAACAGTTAGCAGGATTGAGAAGAGATGCAGAAACCAAAGAGCAGAAACTGACCGAACAATGGGCTGCAAAGCATTTGCGCCTTACGAAGTTTCTAGAACAAGTAGGGTGTAGATCAAGGCTTGCTGAACAAAATGGAAGATAA 1092 0.4606 MSDIHLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVISLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGSINRTVDPINDSKYEHILESFAEKLVKERPSPSFVMAASNSSYLHTDAPPTPGLLPSWLSNSNNAAPVRPNSPSVTLSLSPSTVTAPPPWMQQPVRGPDNTPLVLGNVAPHGAVLSYGENMVMSELVDCCKELEEVHHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEIEAKIKALREEQAVALDRIEGEYKEQLAGLRRDAETKEQKLTEQWAAKHLRLTKFLEQVGCRSRLAEQNGR* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3849 363 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Tpr6g3849 363 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 8 363 - -
Tpr6g3849 363 Coils Coil 273 310 - -
Tpr6g3849 363 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Tpr6g3849 363 Gene3D - 11 65 - -
Tpr6g3849 363 Gene3D - 69 128 - -
Tpr6g3849 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Tpr6g3849 363 Coils Coil 312 336 - -
Tpr6g3849 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Tpr6g3849 363 Pfam Myb-like DNA-binding domain 14 74 - -
Tpr6g3849 363 PANTHER TRANSCRIPTION FACTOR AS1 8 363 IPR031055 GO:0005634|GO:0006351|GO:0010338
Tpr6g3849 363 SMART sant 10 62 IPR001005 -
Tpr6g3849 363 SMART sant 65 113 IPR001005 -
Tpr6g3849 363 MobiDBLite consensus disorder prediction 189 214 - -
Tpr6g3849 363 CDD SANT 13 60 IPR001005 -
Tpr6g3849 363 MobiDBLite consensus disorder prediction 189 206 - -
Tpr6g3849 363 CDD SANT 70 111 IPR001005 -
Tpr6g3849 363 ProSiteProfiles Myb-like domain profile. 6 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3849 Tpr-Chr6 43730693 43733629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3849 8 354 MYB Transcription Factor Family AT2G37630 66.576 7.34e-159 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g3849 Myb_DNA-bind_6 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3849 K09422 - gmx:100819082 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3849 6 43730693 43733629 Tpr6g3849 6 43730693 43733629 ECH