Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3846 ATGGCTGGAATTCTTCTCCTCACCATTGCATCATTAGCCTCTCTTTTTGCTGCAACCACTGCTCGAATCCCTGGTGTTTATAATGGTGGTCCTTGGCAAAGTGCTCATGCTACTTTCTATGGTGGCAGTGATGCCTCAGGAACAATGGGCGGTGCTTGTGGGTATGGAAACTTATACAGTCAAGGTTATGGAGTAAACACAGCAGCACTAAGTACAGCACTATTCAACAATGGCTTAAGTTGTGGTGCATGTTTTGAGCTTAAGTGTGACCAAGATCCACGTTGGTGTAACCCAGGAAACCCATCAATCTTAATAACTGCTACAAACTTTTGTCCTCCAAATTTTGCTGAACCAAGTGACAATGGTGGTTGGTGTAATCCACCTAGAGAACATTTTGATCTTGCTATGCCTATGTTTCTTAAGATTGCTCAGTACCGTGCCGGAATTGTCCCCGTCGCTTACCGCCGGATACCATGCAGAAAGACAGGAGGCATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTTTTAATCACCAACGTCGCGGGTGCAGGTGATATAGTGCGCGTGAGTGTAAAAGGAACCAACACTGCATGGATGACAATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAATGCAGTTTTTGTGGGCCAGGCTTTATCTTTTAGAGTTACCGGCAGTGACCGTCGTACATCAACGTCATGGAACGTGGCACCATCTAATTGGCAGTTTGGACAAACCTTCACCGGGAAGAATTTCCGTGTCTAA 777 0.4582 MAGILLLTIASLASLFAATTARIPGVYNGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDQDPRWCNPGNPSILITATNFCPPNFAEPSDNGGWCNPPREHFDLAMPMFLKIAQYRAGIVPVAYRRIPCRKTGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTNTAWMTMSRNWGQNWQSNAVFVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3846 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Tpr6g3846 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Tpr6g3846 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Tpr6g3846 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Tpr6g3846 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Tpr6g3846 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Tpr6g3846 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Tpr6g3846 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Tpr6g3846 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Tpr6g3846 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Tpr6g3846 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Tpr6g3846 258 Gene3D - 164 256 IPR036749 -
Tpr6g3846 258 PANTHER EXPANSIN 4 257 - -
Tpr6g3846 258 Gene3D - 18 160 IPR036908 -
Tpr6g3846 258 SMART dpbb_1 67 154 IPR007112 -
Tpr6g3846 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Tpr6g3846 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Tpr6g3846 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Tpr6g3846 258 PANTHER EXPANSIN-A15 4 257 IPR002963 GO:0009664
Tpr6g3846 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Tpr6g3846 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Tpr6g3846 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Tpr6g3846 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Tpr6g3846 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Tpr6g3846 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Tpr6g3846 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3846 Tpr-Chr6 43661198 43664938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3846 4 258 Expansin Gene Family AT2G39700 83.529 1.25e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3846 - - gmx:547955 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3846 6 43661198 43664938 Tpr4g3189 4 37733366 37736529 ECH
Tpr6g3846 6 43661198 43664938 Tpr6g3846 6 43661198 43664938 ECH
Tpr6g3846 6 43661198 43664938 Tpr7g4694 7 55218031 55220204 ECH
Tpr6g3846 6 43661198 43664938 Tpr3g2075 3 19116377 19120125 ECH