Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3843 ATGTTGCAACAAGGAACATATAATGTATCTCGAGAACGTTCTACTGTCAAAATTGAAAATTGTGCGGAAGGTGATCATAATGCGGTCTCCTCTTTAGGAGATACTTCAGCAAACAACAATAACATGTCAAAGTGTCGCGCTTTAGTCACAGTACCTGCCATTAACATGGATGCATTAGCTGTTGTTCCATACCGACGCAAATCAGGGAATTCTGACTTTGGACAGCGCCGAATCAGGAGGCCGTTTTCAGTTCTAGAAGTAGAAGCATTGGTTCAGGCAGTTGAGAAACTAGGAACTGGAAGGTGGCGTGATGTCAAGCAACGTGCTTTTGACAATGCTAAGCATCGAACATATGTGGATTTGAAGGATAAGTGGAAGACATTGGTTCACACGGCAAGAATCTCCCCGCAACAAAGAAGAGGAGAACCTGTTCCTCAAGAGCTTCTAGACAGAGTCTTAGCTGCTCATGCATATTGGTCTCAACAACAATCTTCTGCTTCCTTCAATCAAGCTTCAGATTCGTTTTTCGCCGAGATTGGTTCAAATATTCAGCTTCTGCTTCAGATTCGTCCTACAGCTATGTTCATTCAAACTTCAAAATCCAGGTATACAAATGGATAA 621 0.4235 MLQQGTYNVSRERSTVKIENCAEGDHNAVSSLGDTSANNNNMSKCRALVTVPAINMDALAVVPYRRKSGNSDFGQRRIRRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQSSASFNQASDSFFAEIGSNIQLLLQIRPTAMFIQTSKSRYTNG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3843 206 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 167 - -
Tpr6g3843 206 SUPERFAMILY Homeodomain-like 80 161 IPR009057 -
Tpr6g3843 206 CDD SANT_TRF 80 130 - -
Tpr6g3843 206 Gene3D - 68 171 - -
Tpr6g3843 206 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 167 IPR031105 -
Tpr6g3843 206 ProSiteProfiles Myb-like domain profile. 74 129 IPR001005 -
Tpr6g3843 206 Pfam Myb-like DNA-binding domain 79 128 IPR001005 -
Tpr6g3843 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 133 IPR017930 -
Tpr6g3843 206 SMART sant 78 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3843 Tpr-Chr6 43615543 43623863 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr6g3843 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3843 - - adu:107484682 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3843 6 43615543 43623863 Tpr4g3191 4 37781214 37786336 ECH
Tpr6g3843 6 43615543 43623863 Tpr6g3843 6 43615543 43623863 ECH
Tpr6g3843 6 43615543 43623863 Tpr7g4699 7 55254015 55259470 ECH