Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3837 ATGGATCAATTCGATTCTATCCCTCAAGAAGCAATGTGGCAAATGAACTTGAGGTCAAGTGAAACAATGGAATCCGGACCTTATCCCGAGCATCCAGGAGAACCAGATTGTTCTTATTACATCAGAACTGGTCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAATAGGAAGTTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAAAGGTTAGGGCAGCCAGAATGTCAGTACTATCTGAAAACGGGAACTTGCAAATTTGGAGCCACGTGTAGGTTTCATCACCCTAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGTCTGAATGTGCATATTATTTAAGAACCGGTCAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAATAATATGGTACTTTCAATGAGGGGTTCCCCTGCTTATCCTACTGTCCAGTCTCCAACTACACCAGGACAGCAGTCATATGCGGCAGGAATTACAAATTGGTCTAGTTCATCCTATATTCCCAGTCCGAGGTGGCAAGGCCCTTCAAGTTACGCACCCTTAATTCTACCTCAAGGAATGGTTTCAGTGCCTGGGTGGAGTACATACAATGGTCAAATGGGATCAGACAGTCCACAACAAACAATGAGAAATGATCAAACTTATGGAACTTCTCACCAAGGTGAACCAGAAAATGCAGGACTCCAAGGGGCATATTCTCAATGTTCTGGATCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGAGAACATTTTTCCAGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTTTGTCGTTTTCACCATCCACGCGAGAGGACGGTTCCTACCCCTGATTGTATTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTCTTCTATTCGCGGTATGGCATATGCAAGTTTGGCCCAAGCTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATGTACCCGCATCACCATTAGCTGATGCCTCAGGACGTCGTCTGTTAGGTTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGCTCAGCAAAGCCAAGGAGGCTTTCACTATCAGAAACTAGACCGATTCCTTCTGGTGATGATAACATTGATGATGAGGGATAA 1257 0.4471 MDQFDSIPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNESECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRGSPAYPTVQSPTTPGQQSYAAGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSTYNGQMGSDSPQQTMRNDQTYGTSHQGEPENAGLQGAYSQCSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTVPTPDCILSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVPASPLADASGRRLLGSSSGTAALSLSSEGLVESGSAKPRRLSLSETRPIPSGDDNIDDEG* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3837 418 ProSiteProfiles Zinc finger C3H1-type profile. 76 104 IPR000571 GO:0046872
Tpr6g3837 418 SUPERFAMILY CCCH zinc finger 80 105 IPR036855 GO:0046872
Tpr6g3837 418 Gene3D - 30 113 - -
Tpr6g3837 418 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Tpr6g3837 418 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Tpr6g3837 418 SMART c3hfinal6 76 103 IPR000571 GO:0046872
Tpr6g3837 418 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Tpr6g3837 418 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Tpr6g3837 418 SMART c3hfinal6 324 351 IPR000571 GO:0046872
Tpr6g3837 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Tpr6g3837 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 149 IPR000571 GO:0046872
Tpr6g3837 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Tpr6g3837 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 326 351 IPR000571 GO:0046872
Tpr6g3837 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 78 103 IPR000571 GO:0046872
Tpr6g3837 418 Gene3D - 120 168 - -
Tpr6g3837 418 Gene3D - 270 353 - -
Tpr6g3837 418 ProSiteProfiles Zinc finger C3H1-type profile. 324 352 IPR000571 GO:0046872
Tpr6g3837 418 SUPERFAMILY CCCH zinc finger 281 307 IPR036855 GO:0046872
Tpr6g3837 418 MobiDBLite consensus disorder prediction 383 418 - -
Tpr6g3837 418 ProSiteProfiles Zinc finger C3H1-type profile. 122 150 IPR000571 GO:0046872
Tpr6g3837 418 PANTHER PROTEIN PHOSPHATASE RELATED 6 417 - -
Tpr6g3837 418 SUPERFAMILY CCCH zinc finger 327 351 IPR036855 GO:0046872
Tpr6g3837 418 MobiDBLite consensus disorder prediction 219 247 - -
Tpr6g3837 418 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Tpr6g3837 418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 6 417 - -
Tpr6g3837 418 SUPERFAMILY CCCH zinc finger 36 59 IPR036855 GO:0046872
Tpr6g3837 418 SUPERFAMILY CCCH zinc finger 123 150 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3837 Tpr-Chr6 43519613 43526391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3837 12 416 C2H2 Transcription Factor Family AT3G02830 62.228 3.96e-177 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr6g3837 zf-CCCH 5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3837 - - gmx:100786261 782.326