Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3830 ATGGGTCTAATAGTGGAAGTTGAAAACGTTGATCAAGACGACGCCGTTTTGATTCCTCCATCCAATTTCTCAATGGTTGAAGATTGCATTTACCGATCTAGTCTTCCTCAACCTTCCAGTTTTCCTTTCCTCAGAACCCTTAACCTTCGTTCAATCATATACTTGTGTCCTGAATCCTATCCGGAAGAGAATTTGGAGTTCCTAAACTCACAGAATATTCGCTTATTTCAATTTGGAATTGAGGGGAAAACGGAAGTTTCCTTGCCCGTTCTCAAGGATTCTATTATGGAGGCTTTGAAAGTTTTGATTGATGTGAGAAATCACCCTATTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTCCCTTGTTGGATGCTTCAGAAAGTTGCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTATCAGCGATTCGCCGGTGTTAAGTCCAGGACAGCGGATTTAACATTTATAGAGATGTTTGACGTCTTAAGTCTTAGGCAGTGCCTCTACAGCATCATCTACCAGTACCAAGGTGCTTCAAAGAAGCGCAGATTGATGTACCAAGATGAGAATTTACAGAAACCTCGGCTGACATCATTTTAA 609 0.4089 MGLIVEVENVDQDDAVLIPPSNFSMVEDCIYRSSLPQPSSFPFLRTLNLRSIIYLCPESYPEENLEFLNSQNIRLFQFGIEGKTEVSLPVLKDSIMEALKVLIDVRNHPILIHCKRGKHRTGSLVGCFRKLQNWCLSSVFEEYQRFAGVKSRTADLTFIEMFDVLSLRQCLYSIIYQYQGASKKRRLMYQDENLQKPRLTSF* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3830 202 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Tpr6g3830 202 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 12 185 - -
Tpr6g3830 202 Pfam Tyrosine phosphatase family 17 164 IPR004861 -
Tpr6g3830 202 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Tpr6g3830 202 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Tpr6g3830 202 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Tpr6g3830 202 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Tpr6g3830 202 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Tpr6g3830 202 PANTHER TYROSINE-PROTEIN PHOSPHATASE 12 185 - -
Tpr6g3830 202 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 171 IPR020422 GO:0006470|GO:0008138
Tpr6g3830 202 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 164 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3830 Tpr-Chr6 43439504 43442235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3830 1 198 Protein tyrosine phosphatase (PTP) family AT3G02800 66.834 1.62e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3830 K18045 - gmx:100787713 350.132