Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3821 ATGAGCTCCAAGGAGAAACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGGAACATTGCGGCGCCTCTGGACCCTGCAGCATTTGCTGATGCAGTGGTCCAGATTTACTTGGATAATGCTGGTGATTTGGAACTTATTGCAAAAAGCATTGAATCTTCTGACCTCAACTTCTCAAGATACGGCGACACATTTTTTGAGGTTATTTTCACTGGGGGCCGCACACAACCTGGAACTACCAAGCCTGATGAGGGGGAACGCCATCCTTATTCCATAATAGAGTATGAGGCAAAACGTGAGGTCATTTTACCATCTGTGATCTACATACAGAAAGTTTTGCGTAGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTCATGCGAAGATTCCTACAGTCCTTGGAGCTTTTTGAGGAAAATGAGAGGAAAAAGTTGGCAATTTTCACAGCACTTGCTTTTTCCCAGAAGTTATCTGGTCTCCCACCAGAGACTGTGTTCCAACCACTTCTTAAAGATAACCTTGTTGCCAAAGGGCTAGTTCTGACATTTATAACGGACTTCTTTAAGGTGTATTTGAATGACAACAGCCTCGATGATCTTATTTCAATCCTGAAACGTGGGAAAATAGAGGACAATCTTTTGGTCTTTTTCCCCCCTGCAAAAAGAACTAACCAGTCTTTTTCTGAGCATTTCAGCAAGGAAGGACTCACTGCCTTGGTAGAGTATAATGAAAAGAAAATATTTGAGGTGACACTGAAGGAAATGAAGTCTGTTTTAACAACACAGATAACAGAGGAGGCTGATATATCTGAAGTTATTGAGACTGTGAAGCTTCGGGTTAGAGATGCTAAGTTGCCAGAAACTGAGATTGTGCGGATCTTATGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGTAAAAATCAGCAACAGAATGCAAATGCTGCCCTGCGCAAGGTAAAAACTTGGGCAGAACTGTTGAATACTTTCTGCACCAGTGGAAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAACTGTTCCCTGAGATTATTAGATCTCTCTATGACCAAGATGTGCTGGCTGAAGATACCATTCTTCATTGGTTCCGTAAAGGAACAAACCCCAAAGGAAGGCAAACCTTTGTGAAGGCACTGGAACCCTTTGTTAATTGGCTGGAAGAGGCTGAAGAAGAGGAGTGA 1236 0.4288 MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVIFTGGRTQPGTTKPDEGERHPYSIIEYEAKREVILPSVIYIQKVLRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKVYLNDNSLDDLISILKRGKIEDNLLVFFPPAKRTNQSFSEHFSKEGLTALVEYNEKKIFEVTLKEMKSVLTTQITEEADISEVIETVKLRVRDAKLPETEIVRILWDVLMDAVQWSGKNQQQNANAALRKVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNPKGRQTFVKALEPFVNWLEEAEEEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3821 411 CDD W2_eIF5C_like 217 404 IPR043510 -
Tpr6g3821 411 Gene3D - 253 407 - -
Tpr6g3821 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 411 - -
Tpr6g3821 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Tpr6g3821 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
Tpr6g3821 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Tpr6g3821 411 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 411 - -
Tpr6g3821 411 SMART 542_3 325 410 IPR003307 GO:0005515
Tpr6g3821 411 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3821 Tpr-Chr6 43290971 43295526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3821 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 32.727 1.50e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3821 - - gmx:100789838 748.043