Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3806 ATGGGTGCGGCTGACAATATTCATGTCGAAGATGGAACCTTGGAGATTGGAATGGAATATAGAACTGTTTCTGGGGTTGCTGGACCATTGGTTATTCTTGAAAAAGTTAAGGGACCTAAGTATCAAGAGATTGTTAATATTCGGTTAGGAGATGGAACTACGAGGCGTGGACAAGTTCTAGAAGTTGATGGCGAAAAAGCTGTTGTTCAGGTTTTTGAAGGTACGTCTGGGATTGACAATAAATTCACAACTGTGCAATTTACTGGAGAGGTGTTAAAGACTCCTGTATCACTGGACATGCTTGGCCGCATCTTTAATGGTTCTGGAAAACCAATTGATAACGGTCCACCCATATTACCTGAGGCTTACTTGGACATATCAGGTAGTTCCATCAACCCTAGTGAGAGAACCTACCCAGAAGAGATGATTCAGACAGGAATTTCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCTCATAATGAAATTGCTGCACAAATATGTCGTCAGGCGGGCTTAGTCAAGCGATTAGAGAAATCCGATAATCTTCTTGAGGGTGGAGAAGAGGACAATTTCGCTATTGTATTTGCAGCCATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAAGAGAATGGCTCTATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGCGGCAAACATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCAGCCCGAGAAGAGGTTCCAGGTAGACGTGGATATCCTGGTTACATGTATACAGATCTTGCAACAATATATGAACGTGCTGGAAGAATCGAGGGACGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAACGACGATATTACACATCCAACTCCTGATCTTACTGGATATATCACTGAGGGGCAGATATATATTGACCGACAGTTGCACAACAGACAGATATATCCACCAATCAATGTCCTTCCATCGCTGTCTCGATTAATGAAGAGTGCCATCGGGGAGGGAATGACACGAAGGGATCACGCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATCGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCGTCTGAGGACCTGCTGTATCTGGAATTTCTCGACAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCATACGATACCCGCAACATCTTCCAGTCTCTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTTCATCGTATACCGGCAAAGAATCTCGATCAGTACTACAACCGAGATGCTGGCAACTGA 1464 0.4372 MGAADNIHVEDGTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKNLDQYYNRDAGN* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3806 487 PIRSF V-ATPsynth_beta/V-ATPase_B 11 487 IPR022879 -
Tpr6g3806 487 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 4 487 IPR022879 -
Tpr6g3806 487 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 4 487 - -
Tpr6g3806 487 CDD ATP-synt_V_A-type_beta_C 386 480 - -
Tpr6g3806 487 CDD V_A-ATPase_B 91 378 - -
Tpr6g3806 487 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 89 IPR004100 GO:0046034|GO:1902600
Tpr6g3806 487 Gene3D - 28 486 - -
Tpr6g3806 487 CDD ATP-synt_V_A-type_beta_N 19 90 - -
Tpr6g3806 487 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 146 376 IPR000194 GO:0005524
Tpr6g3806 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 382 IPR027417 -
Tpr6g3806 487 ProSitePatterns ATP synthase alpha and beta subunits signature. 367 376 IPR020003 GO:0005524
Tpr6g3806 487 Hamap V-type ATP synthase beta chain [atpB]. 17 485 IPR022879 -
Tpr6g3806 487 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 19 485 IPR005723 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3806 Tpr-Chr6 42900503 42906529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3806 1 487 Primary Pumps ATPases(2) AT4G38510 96.715 0.0 965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3806 K02147 - sspl:121808242 941.028