Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3805 ATGAATACTTTCCTAGTTGTGAGAATGGCTGCAAGTTCCACCACTTTATTTATCTCTCTGTCTCTCTCTTTCCTCTTCCAATCTCATCCTATTCCGTTTTCTCAGCAGTACTCAATTGATCCATTTGTTTTTCTATTCTATATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGTCTCCAACGCCCTGACCTTGAAGTTCATGATGAGAGTCAAGACCAAGATGGAAACAACAACCATGAAGGGCTTGACCTAGTTTCACCAAATCATGGTCTTGGTGATGTTGTTGGTCGTAGACCCAGGGGAAGACCTCCGGGCTCAAAGAACAAACCTAAACCACCAGTTATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCACATCCTTGAGGTCAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCTACCTATGCAAGAAAGCGTCAAAGAGGGATCTGTGTCCTCAGTGGTAGTGGAACTGTCACTAACGTGACCCTGCGACAGCCAGCTGCCGCAGGATCTGTGGTGACACTTCACGGAAGATTTGAGATATTATCTTTGTCTGGATCGTTTCTACCTCCCCCGGCTCCACCTGGTGCTACAAGTTTGAGTGTGTTCCTTGGTGGAGGTCAAGGTCAAGTTGTGGGAGGAAATGTTGTTGGTCCTTTGGTTGCTTCTGGGCCAGTTATTGTTATTGCTTCATCTTTCACTAACGTAGCATATGAGAGGTTACCGTTAGATGAAGATGAATCTCTTCAGATGCAACAAGGGCAATCATCTGCAGGCGGTGGTGGTGGTGGTGGTGATGGTGTTAATAACTCTTTTCCTGACCCGTCTTCGGGGCTTCCATTCTTCAATTTACCTCTAAATATGCCTCAATTGCCTGTGGATGGTTGGGCCGGAAACTCCGGTGGAAGACAATCTTATTGA 945 0.4624 MNTFLVVRMAASSTTLFISLSLSFLFQSHPIPFSQQYSIDPFVFLFYMAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGGGGGDGVNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3805 314 MobiDBLite consensus disorder prediction 71 95 - -
Tpr6g3805 314 ProSiteProfiles PPC domain profile profile. 126 263 IPR005175 -
Tpr6g3805 314 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 257 - -
Tpr6g3805 314 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Tpr6g3805 314 MobiDBLite consensus disorder prediction 255 282 - -
Tpr6g3805 314 Gene3D - 129 264 - -
Tpr6g3805 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 48 314 - -
Tpr6g3805 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 314 IPR014476 GO:0003680
Tpr6g3805 314 CDD DUF296 130 212 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3805 Tpr-Chr6 42884132 42886193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3805 48 311 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.816 1.43e-100 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3805 - - vra:106758954 415.616