Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3804 ATGCAGAGCTTCAAATCAAGGGAATATGTCAGAGAAACTTTTGCTTGGATGCACTATTACTCGTTTCTTACCAATGATGGAATTGAGTTCCTTAGGACTTACCTCAATCTTCCATATGAGATTGTGCCAGCTACTTTGAAGAAACAGGCTAAGCCAACTGGTGCAAGGCCATTCGGCGGTGATAGCCCTAGGGGTCCACCTAGATTCGAGGGAGAAAGGAGATTTGGTGGTGACCGTGATGGTTATCGTGGAGGTCCTAGAGGACCTGGTGGTGAGTTTGGTGGAGAAAAGGGTGGAGCTCCAGCCGACTATAGACCTTCTTTCGGGATACAATGA 336 0.4732 MQSFKSREYVRETFAWMHYYSFLTNDGIEFLRTYLNLPYEIVPATLKKQAKPTGARPFGGDSPRGPPRFEGERRFGGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFGIQ* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3804 111 Pfam Plectin/S10 domain 1 49 IPR005326 -
Tpr6g3804 111 MobiDBLite consensus disorder prediction 48 111 - -
Tpr6g3804 111 Gene3D - 1 59 IPR036388 -
Tpr6g3804 111 MobiDBLite consensus disorder prediction 66 81 - -
Tpr6g3804 111 PANTHER 40S RIBOSOMAL PROTEIN S10 1 109 IPR037447 -
Tpr6g3804 111 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3804 Tpr-Chr6 42859054 42859730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3804 1 106 Cytoplasmic Ribosomal Protein Gene Family AT5G41520 79.630 1.39e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3804 K02947 - gmx:100499910 134.035