Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3799 ATGAAAACCTTGTTCTTATCCTTTTTGTTTATCTTCTTATTCTTCTTCTCCCCACAAGCATCTCAACATTTTCTCTTTCACAACAACAATAGAAGAATCCTTCATGAACCCTTTGTTCCATTAAACTCTCTCCCTCCATCTCAACCACCAAAATCACAACAACCACAACCACTTCATTCTCCACCTTCAACCTCAAACACCAAACACCCATTTTCCACTACCATTCCCACTGACTACAACAACCCAAATCAAGACCAAAACCCAAACCAAAACCCAAACCCAAACGAATCACCATTTTTCCCAAACTACCCTCTTTCACCGCCACCACCATCCCCACTCACTTTTGCTACATTTCCAGCAAACATCTCTGCCCTAATACTTCCTCACACCCCCCAACCAGCTTCCTCATCTAACAAACTCCTCCCTATAGCACTCTCCGCTACTGCCATTGCTGCTGTCGTTGTTACCGTCTCAGCTTTCCTTTACTTCCGCCGACGTTTCCATAACCGTCGGACTTCCATCGACAACAAAACCCTAAGATCTGACAGTAGCCTTGAGCTTTTCCCGCGCAATGTCGAAACCGCCGGCGATGTTGCCGGAAATGCTTCCGATTTTCTCTACCTCGGAACAGTTGTTAACTCGCGCCGAATCGATGAAGCTCCTCGCGGTGGAAGTTCGGTGTCTCGGAAACTTGAATCGCCGGAGCTCCGTCCTCTTCCGCCGTTAGTGCGGCTTCCCGCACCTCCACTACCACCGCCGAAGAGTGACGAGAGCGACTCAGATGAAGAAGATGAGGAATTTTACTCGCCGAGAGGCTCCTCTCTTGGCGGCCTAGAAAGCTCCGGAGGAACCGGTTCATCTTCCCGGCGAGTGTTCTCCACCATTGCCGCCGTAAGAAGCGGCGAATCAAGCTCAATTTCATGCTCTTCTGCTTCTTTCGGTTCGCCGGAGAATTCTCTTTCCGTCAGTCTGTCACCGCCGGCGAGTTCCAGTCCCCGGAGAACACGACAAAAATCACCTGAAACCACACCATCACACAACACCGTTACCACTACCTCATCAGTAATTCACAACCAACACGTGCAATTCAGTTCTTCTTCATCACGTTCAACACCAGAGAGAGATTTTGATGAAGAGAAAGATAAAGAAAAAGAAAAGGCTTCTTCTATATCAACAAATGCACATTCAAAATCATCATCATTGTCATTACAAGAGAGATTTATGGAGAACAATGAGAATGCTTCTTTATCAGAACAACCACAAAGGCAATCTAATGCTTCATCTTCAGTTTTTTCTCTTCCTTCTTCACCTGAGAAAATGATGCATCATCAAGCTTTTGATCAATCTCCGAGAATGTCAAGTGTTTCGGACGGGTCAAAGTTACATGGTCTGTCGTCATTGCCTCTGTCACCCGCCCTACTTTCATCGCCGGAAACCGAGAGAGGAGGGTTTAGCTGCAATTCAAACCGATGGGGAACATTTTCTTATGCCGTGCCTGCGCCACAGAGGAAGCATTGGGAGATTCCGCATCCTGCGAAGCCAATTGCTTCACCACCACCTCCTCCTCCTCCTCTGCCGCGGCCGCGGCAGAGGAGGCATTGGGAAATGTCAGCAACCTCGGCAATTGTTGATCAGCCTCGATCTAGTTTGATGCCACCTGAGTTACTACCTCCTTCGAGGCCTTTTGTGTTGCAAAACCAAACAAGCAATGAGTGTTTAAGGGAAATTGAAGAGAATTCGAAACCTAAATTGAAGCCATTGCATTGGGACAAAGTGAGAACAAACTCTGACCGTGAAACGGTGTGGGATCAGATGAATTCCATGTCGTTTAAATTGAATGAGGAAATGATTGAGACATTGTTTGTAGTGAACACATCAAACCAAAAACCCAAGGATGCTGCTCCATGGTCTGTTCTTCCCCTGCCAAATCAGGATGGAAGAGTACTAGATCCGAAAAAGTCTCAAAATATTGCAATCTTGCTCAAGGCTCTTAATGTCACAATAGAAGAAGTGTGTGAAGCACTTTTAGAAGGTAGTAGTGATACACTTGGCGCAGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGTGTAAATTGAAGGAACATAAAGATGACTCACCAACTAAGCTTGATCATGCTGAGAAATTTTTGAAGGCAGTGCTTGATATACCTTTTGCATTTAAAAGGATCGAAGCAATGCTTTACATGGTCAATTTTCAATCTGAAGTAGAGTATCTTAGAAAATCATTTCAAACTCTAGAGGCTGCCTGTGAAGAACTGCGGAATTGTAGAATGTTCTTGAAGCTTCTAGAGGCTGTACTTAAAACTGGGAACCGCATGAATGTGGGAACAAATCGTGGTGATGCAGAGGCCTTCAAGCTCGATACACTTCTAAAATTGGCTGATGTAAAAGGTGCGGATGGGAAAACCACTCTACTTCATTTTGTCGTACAGGAAATTATTAGAACTGAAGGCGCTCGTCACTCTGGTACTTATCAAATTACAAGCTCTACTTTAACCGAGGATGTTCAGTGTAGGAGACTAGGCCTACAAGTTGTGTCCAATCTGAGTTCAGAGCTATCAAATGTAAAGAGGGCTGCTACTATGGATTCCGAAGCTCTCAGCGGCGATCTCTTTAAACTTTCCAAAGGAACTACAGATATAGCTGGAATTGTGCAGTTAATCGAAAAGCTGGGGTCTGATGAAAGCAGCCTGAAATTTACAGAATCAATGAACAAATTCATTAGAATGGCTGAGGAGGAAATTCTGAAAATTCAAGCTCAAGAAAGTGTTACTATGACCCTTGTGAAGGAGATTACTGAATATTTTCACGGAAACTTAGCAAAGGAAGAAGCTCATCCATTCAGAATCTTCTTAGTTGTAAGAGATTTTGTAGCCGTTCTTGACAGGGTCTGCAAAGAAGTTGGTATGGTAAACGAGCGGACTGCGGTTAGTTCAGGTCATAAATTTCCTATTCCGGTTAATCCAATGCTTCCGCAACCTCTTCCTGGATTATATGGGAGGAAAGATTGTAGTAACTCTTCAGATGATGAAAGTCCATCACCTTAG 3084 0.4442 MKTLFLSFLFIFLFFFSPQASQHFLFHNNNRRILHEPFVPLNSLPPSQPPKSQQPQPLHSPPSTSNTKHPFSTTIPTDYNNPNQDQNPNQNPNPNESPFFPNYPLSPPPPSPLTFATFPANISALILPHTPQPASSSNKLLPIALSATAIAAVVVTVSAFLYFRRRFHNRRTSIDNKTLRSDSSLELFPRNVETAGDVAGNASDFLYLGTVVNSRRIDEAPRGGSSVSRKLESPELRPLPPLVRLPAPPLPPPKSDESDSDEEDEEFYSPRGSSLGGLESSGGTGSSSRRVFSTIAAVRSGESSSISCSSASFGSPENSLSVSLSPPASSSPRRTRQKSPETTPSHNTVTTTSSVIHNQHVQFSSSSSRSTPERDFDEEKDKEKEKASSISTNAHSKSSSLSLQERFMENNENASLSEQPQRQSNASSSVFSLPSSPEKMMHHQAFDQSPRMSSVSDGSKLHGLSSLPLSPALLSSPETERGGFSCNSNRWGTFSYAVPAPQRKHWEIPHPAKPIASPPPPPPPLPRPRQRRHWEMSATSAIVDQPRSSLMPPELLPPSRPFVLQNQTSNECLREIEENSKPKLKPLHWDKVRTNSDRETVWDQMNSMSFKLNEEMIETLFVVNTSNQKPKDAAPWSVLPLPNQDGRVLDPKKSQNIAILLKALNVTIEEVCEALLEGSSDTLGAELLESLLKMAPSKEEECKLKEHKDDSPTKLDHAEKFLKAVLDIPFAFKRIEAMLYMVNFQSEVEYLRKSFQTLEAACEELRNCRMFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARHSGTYQITSSTLTEDVQCRRLGLQVVSNLSSELSNVKRAATMDSEALSGDLFKLSKGTTDIAGIVQLIEKLGSDESSLKFTESMNKFIRMAEEEILKIQAQESVTMTLVKEITEYFHGNLAKEEAHPFRIFLVVRDFVAVLDRVCKEVGMVNERTAVSSGHKFPIPVNPMLPQPLPGLYGRKDCSNSSDDESPSP* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 42 57 - -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 239 254 - -
Tpr6g3799 1027 Gene3D Formin, FH2 domain 572 983 IPR042201 -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 371 390 - -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 512 527 - -
Tpr6g3799 1027 SMART it6_source 574 988 IPR015425 -
Tpr6g3799 1027 ProSiteProfiles Formin homology-2 (FH2) domain profile. 574 999 IPR015425 -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 58 93 - -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 391 435 - -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 39 104 - -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 218 482 - -
Tpr6g3799 1027 SUPERFAMILY Formin homology 2 domain (FH2 domain) 518 985 - -
Tpr6g3799 1027 PANTHER FORMIN-LIKE PROTEIN 1 9 1027 - -
Tpr6g3799 1027 Pfam Formin Homology 2 Domain 578 973 IPR015425 -
Tpr6g3799 1027 PANTHER FORMIN-RELATED 9 1027 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 447 473 - -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 508 532 - -
Tpr6g3799 1027 MobiDBLite consensus disorder prediction 274 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3799 Tpr-Chr6 42705574 42709892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3799 552 1014 FH2 protein (formin) Gene Family AT3G25500 70.021 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3799 - - gmx:100801837 977.622