Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3790 ATGGAGGAATCATTGGAGAATTTGATTTCCTATATGGAAATGGAAGATGAAGTCTTGAATCCAAACTCATTTGATGAGCAAGAGTTTCTAAAAGATATAATCCTTGATCAACCAGAATGTGAACCCTCATCTTATCTTTGTTCCAATAAAATCCAAAACATTGGTACAATTAATGGTGAAGGTATTGCCACTAGCCCCATAAATAGTATTTTGTCCTTTGATGAGACAAGTTTAATCCACAAAAGTACTAGTTCTAACTCAATCATGTCTTTGGAAAGATCAAATGTTGGTTCTCCTCCAGCTTCATATCTTTTATCTTTTGATAACTCAAGTGTTGAACCAATTGTTGAACCAATGTCACATAAAAAAAGGACTATAGTGAAAGATAAAACAACAAAGAAGGTTAAAAGGTCATGTGAGACAGTACAAGATCACTTAATGGCTGAAAGGAAAAGGAGAAGGGAATTAACTGAAAATATCATATCACTTTCAGCCATGATACCTGGCTTGAAAAAGATGGATAAGTGTTATGTACTTAGTGAAGCTGTGAGTTACACGAAACAGCTACAAAATCGCATTAAAGAATTGGAGAATCAAAACATAGTAAATTCAGCAATATTCAAGTGGAAATCAAAAGGTTCATCAAATAAAAAGAAGTACTTAGAATCATTGCTCGAGATTGAAGCTAGAGTTGTAGAAAAGAAAGTGATCATTAGAATTCATTGTGAGAAGCAAAAGGACATAGTGCTCAAAATTCATGAATTGCTTGAAAAGTTCAATCTCACTATAACTTCTAGTAGCATCTTACCATTTGGTGCTTCTATTCTTGTAATCAACATTTTTGCTCAGATGGATGAAGAACACAGCATTACCATGGATGACATTGTGAAAAATCTTAAAAATTATCTGTTGGAAGCATGTGAGAGTCGATAG 933 0.3355 MEESLENLISYMEMEDEVLNPNSFDEQEFLKDIILDQPECEPSSYLCSNKIQNIGTINGEGIATSPINSILSFDETSLIHKSTSSNSIMSLERSNVGSPPASYLLSFDNSSVEPIVEPMSHKKRTIVKDKTTKKVKRSCETVQDHLMAERKRRRELTENIISLSAMIPGLKKMDKCYVLSEAVSYTKQLQNRIKELENQNIVNSAIFKWKSKGSSNKKKYLESLLEIEARVVEKKVIIRIHCEKQKDIVLKIHELLEKFNLTITSSSILPFGASILVINIFAQMDEEHSITMDDIVKNLKNYLLEACESR* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3790 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 202 IPR036638 GO:0046983
Tpr6g3790 310 Pfam Helix-loop-helix DNA-binding domain 144 190 IPR011598 GO:0046983
Tpr6g3790 310 PANTHER BHLH TRANSCRIPTION FACTOR 4 308 - -
Tpr6g3790 310 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 308 - -
Tpr6g3790 310 Coils Coil 179 199 - -
Tpr6g3790 310 Gene3D - 128 203 IPR036638 GO:0046983
Tpr6g3790 310 SMART finulus 146 195 IPR011598 GO:0046983
Tpr6g3790 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3790 Tpr-Chr6 42534267 42537559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3790 97 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.270 2.12e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g3790 HLH 5.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3790 - - aprc:113863851 293.508