Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3779 ATGGAACCTAAATTTATCAAGAATCTAGCATGTGGGAAGATTCTCTTCATAATCCTTTGGGTCCTTTTAACAATATTTTTTCCTCAAATTGCTGGTTTTTCCAAAAAAACTTCTTTGACCACTACTTCTCATGATCAAGCTACCCTTGGAGACCTTGAAGCAAAAGCTTTGTTGAAGTGGAAAGATAGCTTTGAAAACCAAAGTCAATCTCTCTTGTCAACTTGGAGGACAACCACAAATCCATGCAAATGGGAAGGAATTCAGTGTGACAAATCCAAATCTATATTTAGCATAAATCTTGCAAATTATGGATTAATAGGTAAACTTCATACTCTTAGTTTCTCCTCATTCCCAAACCTCATTAGTTTAAATATTTACAACAACTCATTTTATGGGACCATTCCTCCACAAATTGGTAACATGTCCAAAATAAATGTTTTGAACCTTTCTTGTAACCCACTTGAAGGTTCCATCCCCAAAGAAATTTGGACATTGAGGAGTTTAAAAGGCCTTGATTTTTTTTATTGTCAGCTAAGTGGTGAACTTCCTAATTCCATAGGAAACTTGTCCAACCTCTCATATCTAGATTTAACTAAGAATAAATTTTCTAGTGGTTACATTCCTAGTGAAATTGGAAAATTGAAACACTTGGAGTATCTAGCTATGACATTTTGTAATCGTATTGGTCCCATTCCTAAAGAAATTGGAATGTTGACAAAACTTCGTGTTATGGATTTGGCAGGGAACACTCTATCTGGTACCATCCCAGAATCAATTGGTAACATGACTAATTTAAGTAAACTTTTACTTTCAAATAACACATTGTTGTCTGGAACAATCCCACCCTCCTTGTGGAACATGTCTTCTTTGTCTAGACTCTTCCTTACTAGCAATAATTTTTCTGGATCAATCCCTCCTTCTATACAAAACTTGGTTAATTTGGATGCACTTTCATTTTCTTCCAACCACTTTTCTGGACCTATTCCTTCCACAATAGGAAACTTGACAAAGCTAACAAAAATATTCTTGTTCCATAATAATTTTTCTGGATCAATTCCTACTTCTATTGGAAATCTAATCAATATGTTTAGCCTTAGTTTGTTTGAAAACAATCTTTCTGGAACTATTCCTGCTATAATTGGAAATTTGACAAGGCTAACATCCTTATTATTATCCACCAATAAATTTCATGGTAGCATTCCACTTAGCATGTATAACTTTACCAACTGGGAAGTTTTTGAATTTGAGGAGAATGATTTTGTTGGCCATTTATCACCTCATGTATGTTCTGGTGGATCTCTAAAATACTTCTATGCTTCTCATAACCATTTCACCGGTCCAGTACCAACAAGTTTGAAAAACTGCTCTAGTATTGTAAGACTTAGGCTTGAGGATAATCAAATAGAAGGAGATGTAGCACAAGATTTTGGTGTATATCCGAATTTGGAGTACATTGATCTAAGTGATAATAAATTTTATGGTCACATTTCACCAAACTGGGGGAAGTGCCCTAATCTTCATACCTTCATGATATCCAACAATACTATCACTGGTGGCATACCATTAACACTTTTGGAGGCAAACAAGCTAGGCAGGCTCTACCTTTCTTCAAACCATTTAACAGGAAAACTTCCAAAGGAACTTGGATACCTGAAATCATTACTTGAAGTTAAGATCAACAACAATCATCTTTCAGGAAATATTCCAAGTGAAATTGGATTGCTACAGAATCTTGTAGATTTCGATGTAGGAAGAAACATGTTGAATGGGACAATACCAAAAGAGGTTGTGAAGTTACCCTTGTTACGAAATTTGAACTTGAGCAAAAACAAAATTGAAGGGAGAATTCCATCAGACTTTTCAATGTCACAACCTCTTGAATCTCTTGATCTTAGCGGGAATTTGTTGAGTGGAACAATACCAACAGTGCTAGGAGAGTTGAAGCAATTGCAACAACTGAATCTGTCATCCAATAATCTTTCTGGCACTATTCCATCCAGTTTTGATGATGTCATGTCAAGCTTGACCTATATCAACATATCAAACAACCAGTTAGAAGGGAGGTTACCAAATAATCAAGCCTTTCTCAAGGCTCCAATTGAATCATTAATAAATAACAAAGGCTTATGTGGTAATCACACTGGCTTAGTGCTTTGCATAACCAACCACAGCAAAAAGAGCCACAAGACTCTCTTACTAGTATTGTTTGTTATCTTAGGTGCTCTAGTACTAGTATTTTGTGGAGTGGGAATTTCAATGTATATTCTTTATAGGAGAGCAAAAAAGGAAAAAACCAAAGATAAAGATTCCAACGAAGCACAAGAAGAAGAAGAAGTATTTTCCATATGGAGTCATGATGGAAAAATGTTATTTGAAAATATCATTGAAGCTACCAATAACTTTGATAATGATTATCTCATTGGAGTTGGCGGTGAAGGATCTGTTTATAAGGCTAAGTTGTCTACAGATATGGTTGTTGCAGTCAAGAAACTTCATTCGGGAATAGATGGGGAGAGGCCCAATTTCAAATCATTTGAAAATGAAATTCAAGCTTTGACAGAAATCAGGCATTGTAACATCATAAAGCTCTATGGATATTGCCAACATTCAAGATTCTCATTTTTGGTTTATAAGTTCTTGGAAGGGGGAACTTTGACAAAAATTCTAAACAATGACTCGCAAGCCGTTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAGAGGTGTGGCTAATGCTTTGTCCTATATGCATCATGATTGCACACCTCCAATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTTTGGATTTATCTTATGAAGCTCAACTTTCGGATTTTGGAACAGCTAAGTTTCTAAAGACTGATTCAAGTAGTTGGACCACATTTGCAGGCACCTTTGGGTATGCAGCTCCAGAGTTTGCCCAGACCATGGAAGTGACTGAGAAGTGTGATGTTTATAGTTTTGGAGTTCTTTGTTTTGAAATCCTTCTGGGAAACCATCCAGCAGATTTCGTTTCTTCATTGTTCTCGTCGTCTACAGCAACAATGACTTATAATTTGTTGTTGATTGATGTATTAGACCAACGCCCTCCTCGACCTACCAATTCAATTGTCGGAGATATCATCTTGATTACAAGATTGGCATTTTCCTGCTTGAGTGAAAATCCATCTTCTCGTCCAACCATGGATTATGTTTCAAAAGAACTTTTGAAGAGAAAATCACAATCACCTTTAGTGGAACAGTTCCCTCAAATCAGACTTGGACAACTCCAATAA 3282 0.3601 MEPKFIKNLACGKILFIILWVLLTIFFPQIAGFSKKTSLTTTSHDQATLGDLEAKALLKWKDSFENQSQSLLSTWRTTTNPCKWEGIQCDKSKSIFSINLANYGLIGKLHTLSFSSFPNLISLNIYNNSFYGTIPPQIGNMSKINVLNLSCNPLEGSIPKEIWTLRSLKGLDFFYCQLSGELPNSIGNLSNLSYLDLTKNKFSSGYIPSEIGKLKHLEYLAMTFCNRIGPIPKEIGMLTKLRVMDLAGNTLSGTIPESIGNMTNLSKLLLSNNTLLSGTIPPSLWNMSSLSRLFLTSNNFSGSIPPSIQNLVNLDALSFSSNHFSGPIPSTIGNLTKLTKIFLFHNNFSGSIPTSIGNLINMFSLSLFENNLSGTIPAIIGNLTRLTSLLLSTNKFHGSIPLSMYNFTNWEVFEFEENDFVGHLSPHVCSGGSLKYFYASHNHFTGPVPTSLKNCSSIVRLRLEDNQIEGDVAQDFGVYPNLEYIDLSDNKFYGHISPNWGKCPNLHTFMISNNTITGGIPLTLLEANKLGRLYLSSNHLTGKLPKELGYLKSLLEVKINNNHLSGNIPSEIGLLQNLVDFDVGRNMLNGTIPKEVVKLPLLRNLNLSKNKIEGRIPSDFSMSQPLESLDLSGNLLSGTIPTVLGELKQLQQLNLSSNNLSGTIPSSFDDVMSSLTYINISNNQLEGRLPNNQAFLKAPIESLINNKGLCGNHTGLVLCITNHSKKSHKTLLLVLFVILGALVLVFCGVGISMYILYRRAKKEKTKDKDSNEAQEEEEVFSIWSHDGKMLFENIIEATNNFDNDYLIGVGGEGSVYKAKLSTDMVVAVKKLHSGIDGERPNFKSFENEIQALTEIRHCNIIKLYGYCQHSRFSFLVYKFLEGGTLTKILNNDSQAVAFDWEKRVNVVRGVANALSYMHHDCTPPIVHRDISSKNVLLDLSYEAQLSDFGTAKFLKTDSSSWTTFAGTFGYAAPEFAQTMEVTEKCDVYSFGVLCFEILLGNHPADFVSSLFSSSTATMTYNLLLIDVLDQRPPRPTNSIVGDIILITRLAFSCLSENPSSRPTMDYVSKELLKRKSQSPLVEQFPQIRLGQLQ* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3779 1093 SMART LRR_typ_2 383 407 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 599 622 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 189 214 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 262 287 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 551 575 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 335 359 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 672 697 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 238 261 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 117 141 IPR003591 -
Tpr6g3779 1093 SMART LRR_typ_2 647 670 IPR003591 -
Tpr6g3779 1093 Gene3D Ribonuclease Inhibitor 50 204 IPR032675 -
Tpr6g3779 1093 Pfam Leucine rich repeat 626 685 IPR001611 GO:0005515
Tpr6g3779 1093 Gene3D Ribonuclease Inhibitor 382 717 IPR032675 -
Tpr6g3779 1093 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 189 266 - -
Tpr6g3779 1093 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 266 1092 - -
Tpr6g3779 1093 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 13 194 - -
Tpr6g3779 1093 PANTHER LRR RECEPTOR-LIKE KINASE 13 194 - -
Tpr6g3779 1093 PANTHER LRR RECEPTOR-LIKE KINASE 189 266 - -
Tpr6g3779 1093 PANTHER LRR RECEPTOR-LIKE KINASE 266 1092 - -
Tpr6g3779 1093 SUPERFAMILY RNI-like 97 420 - -
Tpr6g3779 1093 Pfam Protein kinase domain 804 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3779 1093 ProSiteProfiles Protein kinase domain profile. 801 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3779 1093 Gene3D Ribonuclease Inhibitor 205 307 IPR032675 -
Tpr6g3779 1093 Gene3D Phosphorylase Kinase; domain 1 760 879 - -
Tpr6g3779 1093 SUPERFAMILY Protein kinase-like (PK-like) 782 1071 IPR011009 -
Tpr6g3779 1093 ProSitePatterns Tyrosine protein kinases specific active-site signature. 925 937 IPR008266 GO:0004672|GO:0006468
Tpr6g3779 1093 Coils Coil 757 777 - -
Tpr6g3779 1093 SUPERFAMILY RNI-like 317 683 - -
Tpr6g3779 1093 Gene3D Ribonuclease Inhibitor 312 381 IPR032675 -
Tpr6g3779 1093 Pfam Leucine rich repeat N-terminal domain 53 90 IPR013210 -
Tpr6g3779 1093 Gene3D Transferase(Phosphotransferase) domain 1 880 1084 - -
Tpr6g3779 1093 PRINTS Leucine-rich repeat signature 626 639 - -
Tpr6g3779 1093 PRINTS Leucine-rich repeat signature 647 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3779 Tpr-Chr6 42325187 42329304 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3779 53 973 Receptor kinase-like Gene Family AT4G08850 44.004 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g3779 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3779 - - gmx:100812486 1416.36