Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3762 ATGGCTTCTTCACCAACTGACTCCAATCCACCATCCGCCGTTCCTCTCCCTCTCTCCTTACCTGCTCCACCACCACCACCAACAACAACAACCTCTTCCCGCCGTCTTCCTCCTCCTTGCTGGACACCAGAAGAAACATCTGCCTTAATCGATTCATATCGTGACAAATGGTATTCTCTTGGCCGTACGAATCTCAAAGCAATTCATTGGCAAGAAGTTGCTGACGCCGTTACCGCTAAGTGCCCTAACGCTTCACCGACACACAAAACCGCCGTTCAGTGCCGTCATAAAATGGAAAAATTACGTAAACGTTACCGATCTGAGATCCAACGGCTTAGATCTCTTCCTGTTCCCAGATCTCGTTCTTCTTCTTCTTGGGTTCATTTTAAATCTATGGATTCTATGGAAAAAGGTCCTTCTCCTCCGCCGATGAAAATTGAAAACCCTAATCATCTTAATCACCGTGAAACCCTAATTGATAACGATGATCTTGACGATGATGATCTTTACGAGGAACTTAGAAGTGCTGCTGGTGGTGGATCTGGAAATAGCAGGAGTATCGATAAACTCTACCGGAATGGAGTTTCCGGTGGTGGTGGTCCTCCCGGTGGTGGTTTTCGTATCAGGATTCCGAGTGGCGTTAGCGTGGCGCAAACTTTCATCGGTAACCATCTTCAGAAAATGATTGATAACCGATCGGGTTCGGAATCTGGTTCTCGGATCAATGGCGGTGGAATGAGGCTTAATAAAGAGAGAGTTGGATTGGGGAAGAGAGAGAGGGAGAGAGAGGTAGAGAGAGAAAAAGATCCAATTGGTGAAATGGTGAATGCTATTAAGGTTTTGAGAGATGGGTTTGTGAGAATGGAGCAAATGAAAATGGAGATGGCTAGAGAGATTGAAACCATGCGTATGGAGATGGAGATGAAGCGTACTGAAATGATTCTTGAGTCTCAGCAGAAGATTGTTGAAGCTTTTGCGAAAGCAGTTTCGGAGAAGAACAAGAAGAGGAAACTGCATAAGGGTAATAGTAACAACAATAACAATAGCAACACCAATAACAACATAGCTTCACCCTCAGAATCGTAG 1086 0.4503 MASSPTDSNPPSAVPLPLSLPAPPPPPTTTTSSRRLPPPCWTPEETSALIDSYRDKWYSLGRTNLKAIHWQEVADAVTAKCPNASPTHKTAVQCRHKMEKLRKRYRSEIQRLRSLPVPRSRSSSSWVHFKSMDSMEKGPSPPPMKIENPNHLNHRETLIDNDDLDDDDLYEELRSAAGGGSGNSRSIDKLYRNGVSGGGGPPGGGFRIRIPSGVSVAQTFIGNHLQKMIDNRSGSESGSRINGGGMRLNKERVGLGKREREREVEREKDPIGEMVNAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQKIVEAFAKAVSEKNKKRKLHKGNSNNNNNSNTNNNIASPSES* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3762 361 MobiDBLite consensus disorder prediction 1 40 - -
Tpr6g3762 361 Coils Coil 95 115 - -
Tpr6g3762 361 MobiDBLite consensus disorder prediction 342 361 - -
Tpr6g3762 361 SMART 118neu2 48 140 IPR006578 -
Tpr6g3762 361 PANTHER TRANSCRIPTION FACTOR 5 339 - -
Tpr6g3762 361 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 5 339 IPR044823 -
Tpr6g3762 361 MobiDBLite consensus disorder prediction 10 33 - -
Tpr6g3762 361 MobiDBLite consensus disorder prediction 331 361 - -
Tpr6g3762 361 Pfam Myb/SANT-like DNA-binding domain 39 135 IPR044822 -
Tpr6g3762 361 Gene3D - 41 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3762 Tpr-Chr6 41984895 41986872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3762 40 135 Trihelix Transcription Factor Family AT3G14180 31.250 5.53e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr6g3762 Myb_DNA-bind_4 7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3762 - - cam:101501151 434.491