Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3758 ATGGTTTCTCTCTCAACCACCCCTTTCTTTCCTCTCACTGCACAAAAAACTTCTCCTTCTTCTACTAGATTTCAACCCAAAAACAACAACGCAAATCCATTCTTTAACAACAAACACAGTAAAGATCCCACAAATTTTGTTTGTGCTTGCATCGCTCCTCCACGTAATAACTTCAACACCCAAGACTCTTCCGCCATTCAATTCAATGGTTCTTCCAAATCAGAACAATTAAGCACTGTGAGGAATCATGAGGATGATTCTGATGTTCTTATTGAGTGTAGAGATGTTTACAAGTCTTTTGGTGAAAAGAAAATCTTAAATGGTGTTAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCCGGGACCGGCAAATCTACAATTTTGAAGATTATTGCAGGACTTCTTGCTCCAGACAAGGGAGAAGTTTATATTCGAGGTAGAAAGCGAGGTGGTTTGATAAGCGATGACGAGATATCTGGTCTTCGGATTGGATTAGTGTTCCAAAGTGCAGCACTTTTTGATTCTTTAACTGTTCGTGAAAATGTTGGTTTCCTCTTGTATGAACACTCAAGAATGCCTGAGGAACAGATATCAGAGCTTATCAAGGAAACCTTGGCTGCAGTTGGTTTGAAGGGAGTTGAGGAGCGACTTCCTTCTGAGTTATCAGGCGGAATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTGTGACACCACAAAGGATTCAATAGAACCAGAGGTGCTCTTGTATGATGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTCGAGGATCTGATTCGCTCTGTGCACATAAAAGGACGAGATGCACTTGGAAAACCTGGGAATATTACATCTTACGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCTATTGATAGGTTATTGTTTTTACACAAGGGACAGCTTGTTTGGGAAGGAATGACTCATGAATTTACCACTTCAACGAATCCAATTGTTCAGCAGTTTGCATCCGGGAGCCTAGATGGTCCTATCAAATATTAG 1056 0.4081 MVSLSTTPFFPLTAQKTSPSSTRFQPKNNNANPFFNNKHSKDPTNFVCACIAPPRNNFNTQDSSAIQFNGSSKSEQLSTVRNHEDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRGGLISDDEISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSRMPEEQISELIKETLAAVGLKGVEERLPSELSGGMKKRVALARSIICDTTKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDALGKPGNITSYVVVTHQHSTIKRAIDRLLFLHKGQLVWEGMTHEFTTSTNPIVQQFASGSLDGPIKY* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3758 351 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 91 342 IPR003439 GO:0005524
Tpr6g3758 351 Pfam ABC transporter 106 261 IPR003439 GO:0005524
Tpr6g3758 351 CDD ABC_Org_Solvent_Resistant 91 340 - -
Tpr6g3758 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 332 IPR027417 -
Tpr6g3758 351 Gene3D - 77 343 IPR027417 -
Tpr6g3758 351 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 1 351 - -
Tpr6g3758 351 SMART AAA_5 115 319 IPR003593 -
Tpr6g3758 351 ProSitePatterns ABC transporters family signature. 226 240 IPR017871 GO:0005524
Tpr6g3758 351 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3758 Tpr-Chr6 41856984 41864538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3758 90 320 Calmodulin-binding Proteins AT2G36910 29.555 1.79e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3758 - - gmx:100783283 580.867