Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3749 ATGGCTTCTATGAACTTGTTGGGTTTCTCTTTGTCACCACAAGAACAACACCCTTCAACCCATCAAGATCAAACGGTGGCTTCTCGTTTTGGTTTCAACCCTCATGATGGTTCTGATGTTCAACAAGGCTTTGATCTCTCTTCTCACTCAACTTCTCATCATCATTCACTTAACAACCTTTCTCACCCTTTTTCCATTTATGAAGCTTTTCATACCAATAACAACATTCAAACCACTCAAGATTGGAAGGAGAACTACAACCAAAACCTACTAATGGGAACATCATGCATTAACCAAAATGTGAATCAACAAGTACAACCAAAGCTAGAAAACTTCCTCGGCGGAAACTCTTTTACCGATCATCACGAATACGGTGGTAACAACTCATACTCTTCATTGCACCTTTCGGCTACTCAGCCAGAAGGTTCAATTTGCGGTGCTAGTACCGGCGGTGGTGGTGATGGTAGGACAAGTAACAACAATAATAACTCAATAGGTTTATCAATGATAAAAACATGGCTCAGAAACCAACCACCACCAGAAAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGAAAGTGGAGCAGCACGTGTGCAAACACTATCACTATCTATGAGTACTGGCTCACAATCAAGTTCATCAGTTCCACTTCTCACTTCAAATGTGATAAGTGGTGAGATTTCCTCATCGGAAAACAAACAACTACTGCCTACAACTGCTGTAGTACTTGATAACAACCAATCTAGTGGTGCTGTTGTTGAAAGTACTGTTCCTAGAAAATCCATTGATACATTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGTTTATTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCCATTAGCCATTATGAAAAAGAATTGGAAGAAATGAAGAACATGACAAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGCGGTGCATCCATTTACCGAGGAGTAACGAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTATCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATATGATGTAGCAGCAATAAAATTCAGAGGACTAAGTGCAGTTACAAATTTTGACATGAGTAGATATGATGTCAAAACCATACTTGATAGTAGCACATTACCAATAGGTGGTGCTGCAAAGCGTTTAAAAGACATGGAACAAGTTGAATCATTGAATAATGTGAATCATGTCAATGTTGATCAAGATCATCATCATCATAGCCTCATCATCAACAACACTTCTCATAATTTAACTGATCATCAAACCATCAACAATTATGCAGCTACAAATGCAGCAGCAGCAGCAGCAGCAGCAGCTAATTGGCATGGTCTTTCATTCCAACAACATCCTTACAATACCAACATGCAATTACAGAATTACCCTTTTGGTGGAGCTCAAACTCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATAATGCTTATACTACTAGTGATATTCATCATCAACAGCTACAGTTAGGGAATAATGCTATTGCTAACAACACTCACAATTTCTTTGGTTTGCAAAATATCATGAGTATGGATTCTGCTTCAATGGATAATAATAGTTCTGGTTCAAATTCTGTTGTTTATGGTGGTGGAGATCATGGTGGATATATGATTCCAATGGCTATTGGAAATGATGCTAATGAGAGTGAGATAAAAGGATTTGGTTATGAAAATGTGTTTGGAAATACTGATCCTTATGCAGCAAGGAATTTGTACTATCATCATCAGCAACAACAATTATCTTTTGATGAAGGATCAAATTGCAATAACAATAATAATTGGGTTCCAACTGCAATTCCAACACTTGCACCAAGGACTAGTAATGTGTCTCTTTGTCCACCTTTCACTCTGTTGCATGAATAG 2145 0.3762 MASMNLLGFSLSPQEQHPSTHQDQTVASRFGFNPHDGSDVQQGFDLSSHSTSHHHSLNNLSHPFSIYEAFHTNNNIQTTQDWKENYNQNLLMGTSCINQNVNQQVQPKLENFLGGNSFTDHHEYGGNNSYSSLHLSATQPEGSICGASTGGGGDGRTSNNNNNSIGLSMIKTWLRNQPPPENNNNNNNNNNNNNNNNNNNNNNNNNESGAARVQTLSLSMSTGSQSSSSVPLLTSNVISGEISSSENKQLLPTTAVVLDNNQSSGAVVESTVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKNMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILDSSTLPIGGAAKRLKDMEQVESLNNVNHVNVDQDHHHHSLIINNTSHNLTDHQTINNYAATNAAAAAAAAANWHGLSFQQHPYNTNMQLQNYPFGGAQTQKLWCKQEQDSDDHNAYTTSDIHHQQLQLGNNAIANNTHNFFGLQNIMSMDSASMDNNSSGSNSVVYGGGDHGGYMIPMAIGNDANESEIKGFGYENVFGNTDPYAARNLYYHHQQQQLSFDEGSNCNNNNNWVPTAIPTLAPRTSNVSLCPPFTLLHE* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3749 714 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 655 - -
Tpr6g3749 714 SUPERFAMILY DNA-binding domain 387 448 IPR016177 GO:0003677
Tpr6g3749 714 ProSiteProfiles AP2/ERF domain profile. 286 352 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 Pfam AP2 domain 286 344 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 Pfam AP2 domain 388 438 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 Gene3D AP2/ERF domain 286 354 IPR036955 GO:0003700|GO:0006355
Tpr6g3749 714 Gene3D AP2/ERF domain 388 448 IPR036955 GO:0003700|GO:0006355
Tpr6g3749 714 SMART rav1_2 388 452 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 SMART rav1_2 286 358 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 CDD AP2 387 448 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 CDD AP2 285 354 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 ProSiteProfiles AP2/ERF domain profile. 388 446 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 SUPERFAMILY DNA-binding domain 285 354 IPR016177 GO:0003677
Tpr6g3749 714 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 655 - -
Tpr6g3749 714 PRINTS Ethylene responsive element binding protein signature 287 298 IPR001471 GO:0003700|GO:0006355
Tpr6g3749 714 PRINTS Ethylene responsive element binding protein signature 428 448 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3749 Tpr-Chr6 41691765 41696700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3749 199 478 AP2-EREBP Transcription Factor Family AT1G51190 71.174 1.12e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr6g3749 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3749 K09285 - gmx:100797584 708.368