Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3738 ATGGCTTCGAAATCGAAATCCCAAACCCTAGACTTAAACTCCACCCAACTATTCACCACCGCTCTTCAATCCCTCAACCTCCCTAAACCCTCTCTCCCACTCCCACCACTCCCTTCTTCCTCAATCCCTCACTCCAATCTCATCCCCAACACCCGCTTCCTCATCGACGCATTTCGCTACTCCGGCGACTTCTCCGTCTCCTATTTCCTCTCCCATTTCCACTCCGATCACTACGCCGGTCTCACCTCCTCCTGGTCCAACGGCATCATCTTCTGTTCCCCAATCACCGCCCATCTCCTCATCAACATCCTCAACATCCCTTCCTCATTCATCTACCCTCTCAATCTTCACCAATCTGTTACAATCGATGGATCTGTTATCACTCTCATTGACGCCAATCACTGTCCTGGCGCAGTTCAGTTCCTTTTTCAGGTTCCGTTTATGGATCAATCCTTGAGGTATGTTCATACTGGTGATTTTCGGTTTTCGAATGAAATGATGTTGGATTCTGCACTTGGTTGTTTTATTGGTGCTGATGCTGTGTTTTTGGATACTACTTATTGTCATCCTAAATTTGTTTTTCCTACGCAAGATGAGTCGGTTAATTATGTTGTTGATGTTGTGAATCAGTGTGATGGTGATGATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGTAAGGAGAAGATTTTGCTTGAGATTGCTAAGAGGTTTGGAAAGAAGGTGCATGTTGATGCTAGGAAAATGGAGGTTTTGAGGGCGCTTGGGTACGGAGAGAGTGGTCAGTTTACTGAGGATTCTTTAGAGACTAATATTCATGTTGTTGGATGGAATGTGTTGGGGGAGACTTGGCCTTATTTTAGGCCTAATTTTGTTAAGATGAAGGAGATTATGACTGAGAGAGGGTACTCTAAGGTTGTGGGTTTTGTGCCTACTGGATGGACTTATGAAGTCAAGCGTGACAAGTTTGCGGTTAGATCCAAGGATTCGTGTCGGATTCATCTTGTGCCGTATAGCGAGCATTCGAACTATGATGAGCTTAGGGAATATGTGAAGTTTTTGAAACCGAAGAGTGTTGTTCCGACTGTGGGTTTAGATGTTGAGAAGAGTGATAGTAAACATGTTGACAAAATGAGGAAGTATTTTGCTGGGTTGGTTGATGAGACGGCCAACAAGAAAGAGTTTTTAAGGGGTTTTAAGCAGTGTGACTCCAGTGAAGTTGGTCTTGAAGCCGGGAAGGATGTTAGTGATGATCTGGAACCAGGGAAGAGCATCGAGAAAGAAGTGAAGCCATCTGATGCGGGAGAGGATAAAAATATTAATCCGGATGTTGCTGTGAGTGTGTCATCTTGTATGGGAGAAACTTTCATAGAAGATCCTACATTGCTAAATGATGAAGAAAAAGAGAAAGTCATTCAAGAACTGAGTTGTTGTTTGCCTACATGGGTCACCCGAAGCCAGATGTTAGATCTTATCAGCATCTCTGGGAGCAATATCGTTGAAGCTGTTTCTAATTTCTTTGAACGTGAAACTGAATTTCATGAGCAAGTAAATTCGGCTCAAACTTCAGTTCCAACACCCAGGTGTTGCTCATCGAATGACACCAGTACCAGTCCCATTTCAAAGTCAAACCTCAACGATACAAACAGCACTTTAAAAAAATGCGACATTTTTCCAAGTCAAGACTCTAAAATGGTTAACCTAAGGCCTCCATTACGAAATCAGATTTCCCCTTCCAAAAGAAAGAGGAGTAGTGAAACTAAGCCAAACAAGAAAGGCAAAGTCAAAGTCCAAGCAAAATCAGAATCAAGTGGTTCAAAGCAGGCAACAATAACAAAATTCTTCAGCAAAGCAATGCCTGTGATGCCTGGTGATACCCAATCTGATCAACTTGGATCAAAGCCCGATGAAAGCCCCATAGTTGAAGAATTATTGCCAACTGATGCTGGAAACTTGTATAAGCAAGAGATTGATCAGTTTATGCAAATAATAAATGGGGACGAGTCATTAAAGAAGCAGGTAATTACTATAATTGAGAACACAAAAGGAGATATCAATAAGGCATTGGATATATATTACTGTAATGGTTGCAATCTTGGTGGAAAAGAAATAGCAGTTCAAGGGGAGTGCAAAATTGACAGACCTTTAGAGAATAAATGTGTGTCACAAGAGTTAAAAGTTATACCTGATATTTCTATGCATAGAATGTTAAAAGATAATGTAGATTCAACTCATGTGTCTCTACCATCTGAGAAATACAACCCCAAGAACCATGCGTGTTGGAGAGATGGAGAACCTGCACCATATTTACATCTTGCACGAACCTTCAACCTGCTTGAGGATGAGAAAGGAAAGATAAAAGCTACTTCAATACTATGCAACATGTTCAGAAGTTTGTTAGCCTTGTCTCCAGAAGACGTGCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAATGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCACTCGAAGAGGCATGCGGGACAAATCGATTGAAATTAAAGGAGATGTATAATAAACTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGCCAAACACAGAGATTGCTCGCACCACCTACACCACTTCTAATTAAGGATATTTACTCTGCACTACGAAAGATAAGTTTACAAACAGGCAATGGAAGCACATTACGAAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAAAAGGAGATAAAATTTCTTGTTCGGACCTTGGTCAGGAACTTGAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTATGAATTCTCGCCCTACTGTGTGTCAAGAAGGAAAGGCAGAAAATTTGAAAGCAGCGCTTCAGGTCCTTTCTGCGGAAGTTGTCGAAGCATATAACATACTGCCAAACTTGGATATCATAGTCTCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCAATCAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTGGTTGATGGATCAGTTCATGTTTTTTCAAGAAACGGAGATGAATCAACTTCGAGATTCCCTGATCTGATTGACATGATAAAGGAATCTTGCAAGCCTGTTGCATCAACTTTCATAATCGATGCAGAGGTTGTTGCTATTGATAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGCGAGAGGAGGCAAAGATACTTTAGTTACTAAAGAGAGCATAAAGGTGGGCATTTGTGTCTTTGTCTTCGATATCATGTTTGCAAATGGAGAACAGTTACTGGGTTTTCCTCTCCGCCAAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAACGACCTGGGTATTTTGAATATGCAAAAGAAACAACTATCGAAGCAGATGATGCCTACTTAACATGTGAAGCCACATTAACTAGAATAAATACTTTCCTTGAAGATGCACTCCGCTCTTCATGTGAAGGAATTATGGTGAAATCGTTGGATATTGATTCTGGGTATTCCCCATCAAAGCGTTCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGCTTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGAGTGATGTCTGGGTTCTCGGACTCTTTTTACATAGAGATGAAAGAACTCTTTTCTGAGGACAAAGTGTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCTGACATGTGGTTTTGTCCACAACTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTAGCAGCGTGTCAGACAGAAACCCAGAAGAATGTAGCACAGCTGCCGATATAGTTGAAATGTTTCAATTGCAGACTCGGAAGATGGATGTCACAACTGAAGGTTGA 4194 0.4113 MASKSKSQTLDLNSTQLFTTALQSLNLPKPSLPLPPLPSSSIPHSNLIPNTRFLIDAFRYSGDFSVSYFLSHFHSDHYAGLTSSWSNGIIFCSPITAHLLINILNIPSSFIYPLNLHQSVTIDGSVITLIDANHCPGAVQFLFQVPFMDQSLRYVHTGDFRFSNEMMLDSALGCFIGADAVFLDTTYCHPKFVFPTQDESVNYVVDVVNQCDGDDVLFLVATYVVGKEKILLEIAKRFGKKVHVDARKMEVLRALGYGESGQFTEDSLETNIHVVGWNVLGETWPYFRPNFVKMKEIMTERGYSKVVGFVPTGWTYEVKRDKFAVRSKDSCRIHLVPYSEHSNYDELREYVKFLKPKSVVPTVGLDVEKSDSKHVDKMRKYFAGLVDETANKKEFLRGFKQCDSSEVGLEAGKDVSDDLEPGKSIEKEVKPSDAGEDKNINPDVAVSVSSCMGETFIEDPTLLNDEEKEKVIQELSCCLPTWVTRSQMLDLISISGSNIVEAVSNFFERETEFHEQVNSAQTSVPTPRCCSSNDTSTSPISKSNLNDTNSTLKKCDIFPSQDSKMVNLRPPLRNQISPSKRKRSSETKPNKKGKVKVQAKSESSGSKQATITKFFSKAMPVMPGDTQSDQLGSKPDESPIVEELLPTDAGNLYKQEIDQFMQIINGDESLKKQVITIIENTKGDINKALDIYYCNGCNLGGKEIAVQGECKIDRPLENKCVSQELKVIPDISMHRMLKDNVDSTHVSLPSEKYNPKNHACWRDGEPAPYLHLARTFNLLEDEKGKIKATSILCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTTALEEACGTNRLKLKEMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISLQTGNGSTLRKKGIIVHLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSRPTVCQEGKAENLKAALQVLSAEVVEAYNILPNLDIIVSSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVHVFSRNGDESTSRFPDLIDMIKESCKPVASTFIIDAEVVAIDRKNGYRIMSFQELSSRARGGKDTLVTKESIKVGICVFVFDIMFANGEQLLGFPLRQRRKYLKDLFYDERPGYFEYAKETTIEADDAYLTCEATLTRINTFLEDALRSSCEGIMVKSLDIDSGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKELFSEDKVLSKKPPYYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISSVSDRNPEECSTAADIVEMFQLQTRKMDVTTEG* 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3738 1397 Gene3D - 193 341 - -
Tpr6g3738 1397 Gene3D DNA ligase/mRNA capping enzyme 1043 1174 - -
Tpr6g3738 1397 Gene3D - 1239 1396 IPR012340 -
Tpr6g3738 1397 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 747 997 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr6g3738 1397 MobiDBLite consensus disorder prediction 563 608 - -
Tpr6g3738 1397 CDD SNM1A-1C-like_MBL-fold 48 190 - -
Tpr6g3738 1397 Pfam DNA repair metallo-beta-lactamase 262 364 IPR011084 -
Tpr6g3738 1397 Gene3D - 745 1016 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr6g3738 1397 ProSiteProfiles ATP-dependent DNA ligase family profile. 1125 1272 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr6g3738 1397 SUPERFAMILY Metallo-hydrolase/oxidoreductase 50 364 IPR036866 -
Tpr6g3738 1397 CDD Adenylation_DNA_ligase_I_Euk 1005 1237 - -
Tpr6g3738 1397 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 826 1385 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tpr6g3738 1397 MobiDBLite consensus disorder prediction 517 546 - -
Tpr6g3738 1397 Pfam ATP dependent DNA ligase domain 1014 1234 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr6g3738 1397 MobiDBLite consensus disorder prediction 579 598 - -
Tpr6g3738 1397 MobiDBLite consensus disorder prediction 411 435 - -
Tpr6g3738 1397 PANTHER DNA LIGASE 2 770 - -
Tpr6g3738 1397 Gene3D - 1025 1238 - -
Tpr6g3738 1397 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1038 1046 IPR016059 GO:0003909
Tpr6g3738 1397 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 970 1236 - -
Tpr6g3738 1397 Pfam DNA ligase N terminus 768 944 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr6g3738 1397 Gene3D - 48 363 IPR036866 -
Tpr6g3738 1397 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 2 770 - -
Tpr6g3738 1397 Pfam ATP dependent DNA ligase C terminal region 1260 1364 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tpr6g3738 1397 CDD OBF_DNA_ligase_I 1243 1385 - -
Tpr6g3738 1397 SUPERFAMILY Nucleic acid-binding proteins 1243 1387 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3738 Tpr-Chr6 41451242 41468116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3738 753 1387 Core DNA Replication Machinery Family AT1G08130 40.156 9.29e-166 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3738 - - gmx:100807673 2140.93