Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3711 ATGTTGTCCTTGTCCCTCTCTTCTCCCACCATCATCATCATCTTCTCAATCTTCATCTTCTCTCTTCATCATACAACGTCGTTACCGTCACATCCATCACTATCTATCTGCAACAACACCACCTTCAACTGTGGTACCATAACCAACCTTTCCTACCCTTTCACCGGCGGTGACCGTCCTTCCTTCTGTGGTCCACCGCAGTTTCATCTAAACTGCCAAAACAATGTTCCAGAGTTGAATATTTCCTCAGTAAGTTACCGAGTTCTTCAAATAAACTCAGCAACTCATTCTATCACCATAGCAAGATTAGACCTTTGGAACGAAACATGTACCCATCATTACATTAACTCAACTTTTGACAGAACTAGCTATAGCTATGGTTTGGGAAATCGTAAACTTATTCTGTATTATGGATGCAAACCCACTTCAGTATTCACCAAAGATCCACATAATTTGTTTTGCTGTGACAGCAATGGGTATAAGAAAAATTCTTATTCTTTGATTGGTCCATTTCCTTTGGACCCAATACTGATTTTTGCTGAGTGTGATGAAGGTGTTGAGGTGCCAATTCTTGAAGAACAAGCTAATAGGTTGGCAGGAAATCGTTCTTTGCTTAGAGAGGTTTTGATGAAAGGGTTTAATGTGAATTATAGCAATCCTTTTGATGATGATTGTTTGAAGTGTAGTGGTTCTGGTGGTCAACAATGTGGGTTTGATTATGATGACAATGAACCCATTTGTATTTGTGGTAATGAGTTGTGTCCTTCTTCAGGTTCAAAATGGAACTGGAAGCTTATTGCGATTGGTGCTTCAGCCGCTGGATTTGGAGCAACCGTGTTCATTATAAGTATTCTCAAACAACAACAACAATCAAGCCTTATTCCACTAAATATTTTCGGAGAAAGAAGAAAACATGTTGACAACAATGTTGAGATTTTCATGCGAAGTTATAACTTATCCCTGCCAAGAAGATATAGTTATACAGAAGTAAAAAAGATCACAAACTCATTCCGAGATAAATTAGGCCAAGGAGGATATGGTGTCGTGTACAAAGCAAGTTTACCTGATGGTCGTCAAGTGGCAGTGAAAGTAATAAACGAGTCAAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACATCACACATGAACATTGTGTCACTTTTAGGCTATAGTTATGAGGTGAACAAAAGAGCCCTAATATATGAATTCATGCCCAAAGGATCATTGGATAAGTTCATCTATAGAAGTGGATTTCCTGATGCAATTTGTGATTTTGATTGGAACACGTTGTTCCAAATTGCTATTGGCATTGCTAGAGGACTTGAGTACTTGCATCAGGGATGTAATTCAAGGATTTTGCATCTTGATATCAAACCCCAAAATATTCTTTTGGATGAAGATTTTTGTCCAAAAATATCTGATTTTGGACTAGCTAAAATATGTCAAAAGAAGGATAGTATCGTGTCAATGCTAGGGACAAGAGGTACTGCAGGATATATGGCGCCCGAAGTATTTAGTAGAGCATTTGGTGGAGTTTCTTACAAATCTGATGTATATAGTTATGGCATGTTGATTCTTGAAATTATTGGTGGAAGAAAGAATTATGACACTGGTACTTCTGAAATGTACTTTCCTGACTGGATTTATCAGGATCTCGAGCAAGGAAATACTCTTTTAAATTGTTTGACAATCTCAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACGAATCCATCAGACAGACCACCAATGAATAAAGTAATAGAAATGCTACTAGGACCACTTTCATCAGTGCCATATCCTCCATGTCCCTTCTTATTTTCTTCCGGAAGGCCATCCCAACAAGTGTCAAATATGTCTTCATCCTATAAATCAAAATAA 1926 0.3769 MLSLSLSSPTIIIIFSIFIFSLHHTTSLPSHPSLSICNNTTFNCGTITNLSYPFTGGDRPSFCGPPQFHLNCQNNVPELNISSVSYRVLQINSATHSITIARLDLWNETCTHHYINSTFDRTSYSYGLGNRKLILYYGCKPTSVFTKDPHNLFCCDSNGYKKNSYSLIGPFPLDPILIFAECDEGVEVPILEEQANRLAGNRSLLREVLMKGFNVNYSNPFDDDCLKCSGSGGQQCGFDYDDNEPICICGNELCPSSGSKWNWKLIAIGASAAGFGATVFIISILKQQQQSSLIPLNIFGERRKHVDNNVEIFMRSYNLSLPRRYSYTEVKKITNSFRDKLGQGGYGVVYKASLPDGRQVAVKVINESKGNGEEFINEVASISRTSHMNIVSLLGYSYEVNKRALIYEFMPKGSLDKFIYRSGFPDAICDFDWNTLFQIAIGIARGLEYLHQGCNSRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKDSIVSMLGTRGTAGYMAPEVFSRAFGGVSYKSDVYSYGMLILEIIGGRKNYDTGTSEMYFPDWIYQDLEQGNTLLNCLTISEEENDMVRKITLVSLWCIQTNPSDRPPMNKVIEMLLGPLSSVPYPPCPFLFSSGRPSQQVSNMSSSYKSK* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3711 641 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Tpr6g3711 641 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Tpr6g3711 641 PANTHER RUST RESISTANCE KINASE LR10-RELATED 32 637 IPR045874 GO:0004672
Tpr6g3711 641 PANTHER TYROSINE KINASE FAMILY PROTEIN 32 637 - -
Tpr6g3711 641 Pfam Wall-associated receptor kinase galacturonan-binding 37 102 IPR025287 GO:0030247
Tpr6g3711 641 SMART serkin_6 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3711 641 Pfam Wall-associated receptor kinase C-terminal 178 251 IPR032872 -
Tpr6g3711 641 ProSiteProfiles Protein kinase domain profile. 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3711 641 Gene3D Phosphorylase Kinase; domain 1 308 409 - -
Tpr6g3711 641 Pfam Protein kinase domain 339 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3711 641 SUPERFAMILY Protein kinase-like (PK-like) 310 606 IPR011009 -
Tpr6g3711 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3711 Tpr-Chr6 41049319 41052421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3711 41 635 Receptor kinase-like Gene Family AT5G38260 40.917 4.68e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr6g3711 Pkinase 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3711 - - cam:101489912 678.707