Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3709 ATGAAACCTCTTCTTCTTCCTTCTTCTTCCATTATTATTTTATTTTTCTCCTTCACACTTTTGATGATCTCAATCATCAATATTCCAACATGTCTATGCGAAGATAGTACCCAATACACGAACTGCAGCTATGCTTTTAAATGCGAAAGCAAAATTAGAAACCTGAACCTGAAGTATCCGTTCTGGGGAGGAAACAGAAATCAATATTGTGGTAGTGTTGCTGCTGATCCTAATACAGAGCTCACATGTGAACGAAGTGTCCCAAAGATAACAATCAATTTTGCCAAATACCGTATTCTTGATTGGGACAATACAACACAGAAACTCACAGTTGCAAGGGACGATTACTCACGTGGTGATGTTTGTACTGTGAATAACAATTACCAGAACAGCTCATTTGATAACACACTGTTTCAACGTTATAACGGTGATGTTTCTACCATCACGCTGTTGTACAGCTGTGATGCAGCTCCAAATTCACAGAATTTGTTTGGTAGAGTTGACTGCGGTGATGGTAAATATGTTGTGTATACGGTTGTTTATGCTGCTTCGGGCATATGTAGTCCGAGTGTTATTGTTGTGATTCCGATTTTGGGAACCCTTGCTGCACAACTTGTATCTGGAAATGGATTAGAAGATGCATTAAAAGACGGTTTTGATTTGAAGTGGACCGGAAATTATGGACAGTGTCAGGGGTGCATTGGTTCTGGCGGTGTGTGTGGGAATGATGGAGGAAGTGAATTCAGATGTTTCTGCAAAGATGGACCTCATAAAACTTCATGCACTTCCGAAAAGGCCTACTCCTCAGGTGCAAAACGGAACTGGAGGCCTATTGTGATAGGGGCATTAGTTGCTGGATTGGGAGTAACTATGTTCTTCATTATTATGCTTAGACGTCACTTTAAAAGGGGTATAGATAGTAAGCAAATGAGTATTTTCACAAAAAGAAGAAAAGTTGTTGACCACAATGTAGAGGTTTTCATTCAAAGGTATAATTCATCGATGCCAAGAAGATATACTTATAGAGAAGTAAAGAGGATCACAAACTCGTTCCGAGATAAATTAGGCCAAGGAGGATATGGTGTTGTGTACAAAGCAAGTTTACCTGACGGTCGTCAAGTGGCGGTGAAAGTATTAAATGAGTCAAAGGGAAATGGAGATGAATTCATAAATGAAGTTGGTAGCATTAGTAGAACATCACACATAAACATTGTATCACTTTTAGGCTTTTGCTATGAGACAAACAAAAGAGCACTAATATATGAATTCATGCCCGAAGGATCGTTGGATAAATTCATCTACAAAAATGGATCCCCTGACGCAATTTGTAATTTTGATTGGAACATATTGTTCCAAATTGCAATTGGCATTGCTAGAGGACTAGAGTACTTGCATCAAGGATGTAACTCAAGAATTCTGCATCTTGATATCAAACCTCAAAACATTCTTTTGGACGAAGATTTTTGTCCTAAAATATCTGATTTTGGACTAGCTAAAATATGTCAAAAGAAGGATAGTATCGTGTCAATACTGGGGATCAGAGGTACTGTAGGATATATGGCACCAGAAGTATTTAGTAGAACATTTGGCGGAGTTTCCTACAAATCCGATGTATACAGTTATGGTATGTTGATTATTGAAATGATCGGAGGAAGAAAGAACTATGATACCGGAGGATCATGTACTTCTGAAAAGTACTTTCCAGACTGGATTTATAAGGATCTCGAGCAAGGTAATACTTTTTTAAATTGTCCAACAATCACAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTTTATGGTGCATTCAAACAAATCCATCGGACAGGCCACCGATGAATAAAGTAATTGAAATGCTACTAGGGCCAGTTTCATCCCTTTCAATTGCTCCAAAACCTGTCTTATCTCCTCCTGAAATGCCACCACTACAAGTGGCAGATATGTCTTCGTCGGATTTGTATGAAATAAATTCAATTACAGTATCAAAATAA 2001 0.3808 MKPLLLPSSSIIILFFSFTLLMISIINIPTCLCEDSTQYTNCSYAFKCESKIRNLNLKYPFWGGNRNQYCGSVAADPNTELTCERSVPKITINFAKYRILDWDNTTQKLTVARDDYSRGDVCTVNNNYQNSSFDNTLFQRYNGDVSTITLLYSCDAAPNSQNLFGRVDCGDGKYVVYTVVYAASGICSPSVIVVIPILGTLAAQLVSGNGLEDALKDGFDLKWTGNYGQCQGCIGSGGVCGNDGGSEFRCFCKDGPHKTSCTSEKAYSSGAKRNWRPIVIGALVAGLGVTMFFIIMLRRHFKRGIDSKQMSIFTKRRKVVDHNVEVFIQRYNSSMPRRYTYREVKRITNSFRDKLGQGGYGVVYKASLPDGRQVAVKVLNESKGNGDEFINEVGSISRTSHINIVSLLGFCYETNKRALIYEFMPEGSLDKFIYKNGSPDAICNFDWNILFQIAIGIARGLEYLHQGCNSRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKDSIVSILGIRGTVGYMAPEVFSRTFGGVSYKSDVYSYGMLIIEMIGGRKNYDTGGSCTSEKYFPDWIYKDLEQGNTFLNCPTITEEENDMVRKITLVSLWCIQTNPSDRPPMNKVIEMLLGPVSSLSIAPKPVLSPPEMPPLQVADMSSSDLYEINSITVSK* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3709 666 PANTHER RUST RESISTANCE KINASE LR10-RELATED 23 663 IPR045874 GO:0004672
Tpr6g3709 666 Gene3D Transferase(Phosphotransferase) domain 1 424 629 - -
Tpr6g3709 666 PANTHER TYROSINE KINASE FAMILY PROTEIN 23 663 - -
Tpr6g3709 666 SMART serkin_6 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3709 666 Pfam Wall-associated receptor kinase galacturonan-binding 48 113 IPR025287 GO:0030247
Tpr6g3709 666 ProSiteProfiles Protein kinase domain profile. 349 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3709 666 Pfam Wall-associated receptor kinase C-terminal 186 255 IPR032872 -
Tpr6g3709 666 SUPERFAMILY Protein kinase-like (PK-like) 326 623 IPR011009 -
Tpr6g3709 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Tpr6g3709 666 Pfam Protein kinase domain 353 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3709 666 Gene3D Phosphorylase Kinase; domain 1 323 423 - -
Tpr6g3709 666 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3709 Tpr-Chr6 41037757 41040738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3709 16 665 Receptor kinase-like Gene Family AT1G66910 39.270 9.64e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr6g3709 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3709 - - cam:101489912 942.569