Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3700 ATGCATCCTAACTCAGTGGCAGCAGTGGTATCGTCTCCTCGTTATCATTATCATAATGAGACAACTGATCTCCCACACGTGCCTGGTTCCAAACTCCGCCTCTTGTGCAGCTACGGCGGCCACATCATGCCACGTGACAACTCCCTCTACTATGTAGGTGGAGACACTCGCATTGTGGCCGTGGACCGCCACTCATCCTTAACACGCCTCTGTGCTCACCTCTCTTGCAATCTCCTTCATGGAAGAAGATCATTCAATCTCAATCTTAAGTACCATCTTCCCGATGAAGACCTTGACAATCTCATCACTGTTTCAACCGATGAAGACCTCCAAAATATGATCGAAGAGTATGATCGTTTGTCTTCAAACTCTTCCCCCTCCCCTTCTCGACTTAGATTGTTCCTCTTTTTCTCCAAACCAGAAACTGCTGTTTCCATGGACACTCTCCACCATGACTCTAATCATTCGTGGTTCGTGGAAGCTCTCAACAACTCAGGGATTCTCTCTCGAGTTGTTTCTGATTCCGCTGCAGTTGTTGATAATTGCCTCCTCAACCTTGATGATTATGAAGCGAGTGCTTCTAGCTGCAACGATGAAAATACTAATAATAATGTTAACAAGGAGCATTTAATTGATGTGGATTATTCTGTACCTGTGGACGAGGAGGACAACATGTTTAATTATTCATTTGATAATCTTCCTCAAATACGAGTTCGCGCTGATGAACAAAGGCCTGTTGAGATGGAGCAGCAGCAACAGCAGGAGGATAACAACTTTGACGATGTAAAAGTGGCTAACGTGAAGCAAGATGATGCTTTTCTTGTGCAATCACAGGTCAAAAGTGATCAAAATCAGCAAGAGGAACAACTAAACAATTCTACTTACGTCTTGTTGGGGTTGATTGCAATGTAA 912 0.4397 MHPNSVAAVVSSPRYHYHNETTDLPHVPGSKLRLLCSYGGHIMPRDNSLYYVGGDTRIVAVDRHSSLTRLCAHLSCNLLHGRRSFNLNLKYHLPDEDLDNLITVSTDEDLQNMIEEYDRLSSNSSPSPSRLRLFLFFSKPETAVSMDTLHHDSNHSWFVEALNNSGILSRVVSDSAAVVDNCLLNLDDYEASASSCNDENTNNNVNKEHLIDVDYSVPVDEEDNMFNYSFDNLPQIRVRADEQRPVEMEQQQQQEDNNFDDVKVANVKQDDAFLVQSQVKSDQNQQEEQLNNSTYVLLGLIAM* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3700 303 Pfam PB1 domain 45 136 IPR000270 GO:0005515
Tpr6g3700 303 CDD PB1_UP2 35 136 - -
Tpr6g3700 303 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 2 253 - -
Tpr6g3700 303 Gene3D - 50 137 - -
Tpr6g3700 303 SMART PB1_new 44 138 IPR000270 GO:0005515
Tpr6g3700 303 PANTHER OS05G0427100 PROTEIN-RELATED 2 253 - -
Tpr6g3700 303 SUPERFAMILY CAD & PB1 domains 46 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3700 Tpr-Chr6 40836518 40837429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3700 9 164 MAP Kinase Kinase Kinase AT1G04700 37.143 5.81e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3700 - - mtr:MTR_8g106245 350.132