Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3698 ATGGCAAATAATGAGCTTGAAACCACAATTGCTTTGCAATCTTTGAGAGCTCCATTGGATCCTTTTCCTATAACACCCGAGGAAAGGTTCCTGAATGATATGCGGGTTAGGTACCGCACTTATTACCTTGAATGCAATGTTAACTACGGTGCTGTCAAGCTACCAAGGATGTTTGCCGAGGATTTCGGGGAAGAATTGTGTCGCGTTGTCACTTTGGTTGATTCAAGGGATAATCACTTGGAGGTTTTGGTTGATAAAATCGATGAGGATGTTTATTTCACACGTGGTTGGGCGTCTGTTAAGAATTTTTACAACATAAAAACTGGTGCATGGGTCGTGTTAATTTATTCAGGTTTCGGACACTTCGGGATTACTATCCATGATAGACTTCAATTCCCGGTTTTAACCCCCACATTCGACCCACCTATGAGATTGGTTATAGATAAGTTAGATGTTCTTCCACACTTCGTTGATAATTTATCTGAGGATCTCCATGACCTATCATATGCTCATGATGAACGATTTTTTGACGTATCATTAGAAAAGACATTGACTTATTTTGACGTGTCTACCGGTTATTTGATGTTGCCATATGATGGATTCGGGGAGTATGCTTTCCATCAAGGAACCACTTCTATCAAAGTGGTTGACGAATATGGAAATGCTTGGTTTTGTAGTCTGATATTTGTGTCATTCCCATGCAAGCATTACAAGATTGGTGGACAGTGGGGCATGTATGTCAAGATGACCAAGGTCTCTGAGATTACTGGTGGCAAGATTGATTTTCAGTTGAGAGTAAGAGTAATCAATCTATGGTCTACACCGGATCGTTCTAATCCTAAGGAGGAAGGGGCTCTTCACATGATTTTTCTAGATAAAGATTGCGGAAAGATATATGCAACTGTCCGAAAGGATTTGCTTTCTCAGTTCAAGGATGACATTGAGGAGGGTGCTGCTTATGTAGTGGAGAGGTTTATGGTTGGTAAGAACGACTCTTCCTTCAAAAGTACTCCTCACAAACACAAACTTAATTTTATGCGTGGAACTAAGCTGATTAAAGTCAAAGCTGCCGAGATACCACCAAATCATTTCAATTTCATGCCTTTCGATGAAATTCTTGCTTCTACTAAAGAGGATCAGTTACTTGATGTTATTGGTCATGTTGTTGAGAAAAATGTTATGAAAGAGACTGAGAAAAATGGCAAGATAAGTAAGCTTATGGATGCAACACTTGAAGACTTAGAGTGA 1248 0.3966 MANNELETTIALQSLRAPLDPFPITPEERFLNDMRVRYRTYYLECNVNYGAVKLPRMFAEDFGEELCRVVTLVDSRDNHLEVLVDKIDEDVYFTRGWASVKNFYNIKTGAWVVLIYSGFGHFGITIHDRLQFPVLTPTFDPPMRLVIDKLDVLPHFVDNLSEDLHDLSYAHDERFFDVSLEKTLTYFDVSTGYLMLPYDGFGEYAFHQGTTSIKVVDEYGNAWFCSLIFVSFPCKHYKIGGQWGMYVKMTKVSEITGGKIDFQLRVRVINLWSTPDRSNPKEEGALHMIFLDKDCGKIYATVRKDLLSQFKDDIEEGAAYVVERFMVGKNDSSFKSTPHKHKLNFMRGTKLIKVKAAEIPPNHFNFMPFDEILASTKEDQLLDVIGHVVEKNVMKETEKNGKISKLMDATLEDLE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3698 415 PANTHER REPLICATION FACTOR A 1, RFA1 276 397 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr6g3698 415 SUPERFAMILY DNA-binding pseudobarrel domain 38 128 IPR015300 -
Tpr6g3698 415 SUPERFAMILY Nucleic acid-binding proteins 248 353 IPR012340 -
Tpr6g3698 415 Pfam Domain of unknown function DUF223 288 378 IPR003871 -
Tpr6g3698 415 CDD RPA1_DBD_A_like 264 350 - -
Tpr6g3698 415 SUPERFAMILY DNA-binding pseudobarrel domain 180 248 IPR015300 -
Tpr6g3698 415 Gene3D - 247 353 IPR012340 -
Tpr6g3698 415 PANTHER BNAC07G49340D PROTEIN 276 397 - -
Tpr6g3698 415 Gene3D - 30 130 IPR015300 -
Tpr6g3698 415 Gene3D - 357 415 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3698 Tpr-Chr6 40806553 40809475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3698 262 388 Core DNA Replication Machinery Family AT5G08020 26.154 6.77e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3698 - - mtr:MTR_6g465570 214.542