Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3687 ATGGCTTCCACCACCAAAGACTCGGATTTTGCATATTTGGAACACATTCAACAATACCTTCTATTTGATGATTACAGCCTTCTTACTACATCAACTGATGATCAATCTTTACCAAGCCCTAAAAGTGACAACGATTCCGATACAATTTTAAAGGCGCGTGAAATAAGTGCACCACCTACATGGAAGAGATACAAGGGCGTGAGGCGTAGGCCATGGGGCAAGTTCGCAGCAGAGATCAGAGATCCAAAGAAGAATGGTGCTAGAGTTTGTCTTGGAATTTATCTGACAGAGGAGGAAGCAACTTTGACTTACGACAAAGCTGCTTTCAAGATGCGTGGTCAAAAAGCCAAACTTAATTTTCCTCACCTGATTGGCTCTGATGTTTTGACATCAAAGTCAAAGAGGGATGTGGTTTTGAAACGAGAGTCACCTGAGCCCTCTTCATCAGAGGGAAGTTGTGAGTCAACATCACCAGGGTCGAAGAGGAGGAGGGGCATGGTTGACCTACTTAACAAATTCGCCAATAATAAAAGTCAAGCCATGGTGGTTGAAATTGAAAAGGCCTCACAAGCAAATGATGATTTTCAGCAATGGGTTAATGAGTTGAATGATTGCACTCTAATCTGGAGCTCATAG 636 0.4277 MASTTKDSDFAYLEHIQQYLLFDDYSLLTTSTDDQSLPSPKSDNDSDTILKAREISAPPTWKRYKGVRRRPWGKFAAEIRDPKKNGARVCLGIYLTEEEATLTYDKAAFKMRGQKAKLNFPHLIGSDVLTSKSKRDVVLKRESPEPSSSEGSCESTSPGSKRRRGMVDLLNKFANNKSQAMVVEIEKASQANDDFQQWVNELNDCTLIWSS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3687 211 MobiDBLite consensus disorder prediction 145 159 - -
Tpr6g3687 211 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Tpr6g3687 211 PANTHER DNA-BINDING DOMAIN 1 179 IPR044808 GO:0003700|GO:0009873
Tpr6g3687 211 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Tpr6g3687 211 MobiDBLite consensus disorder prediction 135 162 - -
Tpr6g3687 211 CDD AP2 62 123 IPR001471 GO:0003700|GO:0006355
Tpr6g3687 211 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Tpr6g3687 211 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Tpr6g3687 211 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Tpr6g3687 211 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Tpr6g3687 211 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 179 - -
Tpr6g3687 211 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3687 Tpr-Chr6 40620143 40622063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3687 63 150 AP2-EREBP Transcription Factor Family AT2G44840 65.909 8.01e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g3687 AP2 2.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3687 K09286 - gmx:102663872 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0344 2 4125150 4127689 Tpr6g3687 6 40620143 40622063 PCT