Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3686 ATGGCTTCCACCAACAATGACTCTGATTTAGCATATTTGGAACACATTCAAAAATACCTTCTTTTTGATGATTCCAGCATTCTAACATCCCATCAATCTTTACCTAGCCCTAAAAGTGACAACGATTTGGACACGAAAGTTGAGGTGCTTGGAGTAAGTGCTCCTCCATCATGGAAGAGATACAAGGGTGTGAGGCGTAGGCCATGGGGGAAGTTTGCTGCAGAGATCAGAGATCCAAAGAAGAATGGCGCTAGAGTTTGGCTTGGAACTTATCTGACTGAGGAGGAAGCAGGTTTGGCTTACGACAAAGCTGCTTTTAAGATGCGTGGCCGAAAAGCCAAACTTAATTTTCCCCATCTCATTGGCTCTGATGAGTTGATATCAGAGCCAAAGCGAGAGGTTGCTCTGAAACGGGAATCACCCGAGCCTTCTTCATCAGAGGGAAGTTGTGAGTCATCCTCGCCAGGGTCGAAAAGGAGGAGAGGCATGGTCGACCTACTTAACAAATTAGCCAAGAATAAAAGTCAAAGTCAAGCCATGGTGGTTGAAATTGAAAAGGCCTCACAAACAAATGATGATTTTGAGCAATGGGTGAACGAATTGAATGATTGCACTCTAATCTGGAGCTCATAG 633 0.4439 MASTNNDSDLAYLEHIQKYLLFDDSSILTSHQSLPSPKSDNDLDTKVEVLGVSAPPSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGLAYDKAAFKMRGRKAKLNFPHLIGSDELISEPKREVALKRESPEPSSSEGSCESSSPGSKRRRGMVDLLNKLAKNKSQSQAMVVEIEKASQTNDDFEQWVNELNDCTLIWSS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3686 210 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Tpr6g3686 210 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 176 - -
Tpr6g3686 210 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Tpr6g3686 210 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Tpr6g3686 210 CDD AP2 59 120 IPR001471 GO:0003700|GO:0006355
Tpr6g3686 210 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Tpr6g3686 210 MobiDBLite consensus disorder prediction 142 156 - -
Tpr6g3686 210 PANTHER DNA-BINDING DOMAIN 1 176 IPR044808 GO:0003700|GO:0009873
Tpr6g3686 210 MobiDBLite consensus disorder prediction 131 179 - -
Tpr6g3686 210 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Tpr6g3686 210 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Tpr6g3686 210 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3686 Tpr-Chr6 40604407 40605363 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3686 60 147 AP2-EREBP Transcription Factor Family AT2G44840 71.591 2.15e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g3686 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3686 K09286 - gmx:102663872 239.965