Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3684 ATGTTTTCTCCCACCAAAGACTCAGAGTTAACATATTTGGAACACATTCAACAATACCTTCTTCATGATGATTCTAACATTCTTACATCACATCAACAAATTCAAAGCCCTAATAATAATTCAAACACAACTGCATCCGCTCATGAAGTGCGCGCGCCTCCCACATGGAAGCGCTATAGGGGTGTGAGGCGTAGGCCGTGGGGGAAATTTGCAGCGGAGATAAGAGATCCAAAGAAAAATGGTGCTAGGGTTTGGCTTGGCACTTATGTGACCGAGGAGGAAGCAGGTTTGGCTTACGACAAAGCAGCTTTCAAGATGCGAGGCCGAAAGGCCAAGCTCAATTTTCCCCATCTCATTGGCTCTGACGTATTTACAGAGCCAAAGATGGAGGTGACTTTGAAACGGGAATCGCCGGAGCCTTCTTCTTCATCGGAAGATAGTTGTGAGTCATCATCACAAGGGTCAAAGAGGAAGAGGGGTATGGTTAATCTACTTAACAAATTAGCCAAAAATAGAAGTCAAGCCATGGTGGTAGAAAATAAAATGGCTTCACAAGCAAATGATGTTGAGCAATGGGTGAATGAGTTGAATGATTTCTCTCTAATATGGTGTTCTTAG 618 0.4353 MFSPTKDSELTYLEHIQQYLLHDDSNILTSHQQIQSPNNNSNTTASAHEVRAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAGLAYDKAAFKMRGRKAKLNFPHLIGSDVFTEPKMEVTLKRESPEPSSSSEDSCESSSQGSKRKRGMVNLLNKLAKNRSQAMVVENKMASQANDVEQWVNELNDFSLIWCS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3684 205 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Tpr6g3684 205 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Tpr6g3684 205 CDD AP2 57 118 IPR001471 GO:0003700|GO:0006355
Tpr6g3684 205 Gene3D AP2/ERF domain 57 117 IPR036955 GO:0003700|GO:0006355
Tpr6g3684 205 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 174 - -
Tpr6g3684 205 MobiDBLite consensus disorder prediction 131 160 - -
Tpr6g3684 205 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Tpr6g3684 205 PRINTS Ethylene responsive element binding protein signature 98 118 IPR001471 GO:0003700|GO:0006355
Tpr6g3684 205 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Tpr6g3684 205 MobiDBLite consensus disorder prediction 143 159 - -
Tpr6g3684 205 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Tpr6g3684 205 PANTHER DNA-BINDING DOMAIN 1 174 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3684 Tpr-Chr6 40583511 40584266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3684 58 149 AP2-EREBP Transcription Factor Family AT2G44840 69.565 3.23e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr6g3684 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3684 K09286 - gmx:102663872 255.373