Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3680 ATGGAAGAGGGAAAACATAAATCGAGGAAAGAAGACAGTGATTCTAAGAGGAGTCACCGTGATGGAGATCGTGAAAGAACTGGTGGAAGAGGTAAGGATAGAAGCGATGGTAGGCATAAGGATAATACGGAGAAGAGGGATCGTGAATCTCGACGGCATTACAGAGAGAAAAGCATTGATTATGAGGATAAGCATGATAGAGACAGGGAGAAGCCCAGGGATGTTAAAGAGAAGGATAGGGCACGGGTTCATGATGTCGACCGAGAAAAGAGAGACAGAAAAAGGGAAAGAGGTAGAGAAGAGAAAGAAAAGGAGAGAGTAAGAGAGAAAGAAAGAGATATGGAAGATAAGGAAAAGGAGAGAATGAGGGAGAAAGACAGAGAGAGGGAAAGAAAGGAGGAGAAGGAGAGGATTAGAGAGAAAGAAAGGGCAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAGAGAAAAGGAAAGAGATAAAGGAAAGAGAGGACGGGAGCAGGAGCGGGAGAAACATAGAGATGTTGATAGCGAAAATAGTGATGGTGAGTTGAGGGAGAGGAATAGAAAGCGGCATAAGACAGAGGACGGCAGTTATAAGGGGCGGGAGAAGGAAAAGAGTTCTAGCAAGTCAAACAAGATTAACGGAAGCCCTAGGAGAAAGAGCGATGGAGATGACTCTGATTCCAAAGGGAAAGAGAAAAGACTTACCCGTGAGGAGAAAATGGAAGTTGAGCAAAAGAGGTTGGATGATGAAATAGTAAAGCGAAGGAGGAGAGTTCAAGCGTCGCAAGAGCTAAAGAGGAAGCAGGAAGAGTCAGAAAGAGAAAAGCAAGGTGGAGCAAGTGTTTCTGAACTAGAGTCTGGAAAGGCGTGGACACTTGAAGGGGAGGAATCTGATGATGAAGATGGAACAGGTAGACATACGAGTATGGATGTAGACGAAGACGATAAACTTGCTGATAATGAACCTAGGGAGTCAATGGTGGTAGATGTTGACAATGGAACAGTTGCATCCGATTTACATAATGGAGATACTGCTGACGATGAGATTGACCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGTTGCAGAATGCTGTTAACTCAACACTTGATAAAGCTTCTGACTTTAAACCCAAGGATAAAGAGGATGAGCGTAGTAATGGTCGACAATCAAGGAAACGTTCAAATAAATCTATTGGCAGGATAATTCCTGGTGAAGAGTCCGACTCAGATTATGCAGATCCTGATGTTGAGGGGGATCCATTAGATGAAGATGACGACGAGTTCATGAAGAGAGTGAAGAAAACAAAAGTTGAAAAGCTTTCGATAGTTGACCACTCAAAGATTGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAAGAGATCTCAAAGATGACTCTCGAAGAAGTTGTGTTATACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAGTTTTAGAGACAATAAAGAAGGCAAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCATTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCCAAAACTGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATAAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCGACAAGAGAACTTGTTCAACAGATTCATAGTGACATAAAGAAGTTTACAAAGGTAATGGGTATCAGGTGTGTTCCTGTCTATGGAGGTTCCGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTAGTTTGTACTCCAGGTAGGATGATCGACATACTGTGTACCAGTAGTGGAAAAATAACTAACCTGCGCAGAGTGACTTATCTGGTCATGGATGAGGCGGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCCACTTTCCCGCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTAAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTGGAACTACTTGGAGAATGGTACGAGAAAGGAAAGATTTTGGTATTTGTCCACTCACAGGATAAATGTGATGCATTGTTCAAGGATCTAATGAAACATGGCTATCCATGTCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGCGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGACGTCAAGGAGCTCGAATTGGTGATCAATTTTAATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGTGCTGGCCGAAAAGGTTGTGCCATCACATTTATTTCTGAAGATGATGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCCGAGCAGATTGTTCCTGATGATCTGAAATCCCTTGCCGATGGCTTTATGGCAAAAGTGACTCAAGGACTGGAGAAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGGGCTGCAAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCGGATTCTGAAGATGAAGATGATGGTATTAGGAAGGCAGGAGGTGATATTTCACAGCACCCTGCTCTTGCTCAGATTTCAAATGGTGGGCTACCTGTTTCTTTGCCACCTGTTCTTGGTCTCCAGACTCCAGTTTTGCCTGGGACAGGGCTACCCGTTGCTGCAAATGATGGGGCAGCTCGAGCTGCAATAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACGCACAAGGATACTTTAGGCCCCATTTCTGAGTGGACTGGAGCTGCTATTACCACAAGGGGACAGTATTTTCCACCTGGCAAAGTCGCAGGACCCGGGGATCGCAAACTCTACTTGTTCATTGAGGGTCGTAGTGAGCAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACTAACCAGGCTTTGCAACTACCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAA 3360 0.4354 MEEGKHKSRKEDSDSKRSHRDGDRERTGGRGKDRSDGRHKDNTEKRDRESRRHYREKSIDYEDKHDRDREKPRDVKEKDRARVHDVDREKRDRKRERGREEKEKERVREKERDMEDKEKERMREKDRERERKEEKERIREKERARERRDHEREKEREKERDKGKRGREQEREKHRDVDSENSDGELRERNRKRHKTEDGSYKGREKEKSSSKSNKINGSPRRKSDGDDSDSKGKEKRLTREEKMEVEQKRLDDEIVKRRRRVQASQELKRKQEESEREKQGGASVSELESGKAWTLEGEESDDEDGTGRHTSMDVDEDDKLADNEPRESMVVDVDNGTVASDLHNGDTADDEIDPLDAFMNSMVLPEVEKLQNAVNSTLDKASDFKPKDKEDERSNGRQSRKRSNKSIGRIIPGEESDSDYADPDVEGDPLDEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFKKNFYIEVKEISKMTLEEVVLYRKQLELKIHGKDVPKPVKSWNQTGLTSKVLETIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFNVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEKAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQISNGGLPVSLPPVLGLQTPVLPGTGLPVAANDGAARAAIAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKDTLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGRSEQSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3680 1119 MobiDBLite consensus disorder prediction 418 434 - -
Tpr6g3680 1119 MobiDBLite consensus disorder prediction 378 436 - -
Tpr6g3680 1119 MobiDBLite consensus disorder prediction 1 350 - -
Tpr6g3680 1119 Pfam Helicase conserved C-terminal domain 737 845 IPR001650 -
Tpr6g3680 1119 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 884 IPR001650 -
Tpr6g3680 1119 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 503 531 IPR014014 GO:0003724
Tpr6g3680 1119 MobiDBLite consensus disorder prediction 919 943 - -
Tpr6g3680 1119 SMART helicmild6 764 845 IPR001650 -
Tpr6g3680 1119 MobiDBLite consensus disorder prediction 919 933 - -
Tpr6g3680 1119 Gene3D - 456 712 IPR027417 -
Tpr6g3680 1119 CDD SF2_C_DEAD 724 854 - -
Tpr6g3680 1119 Coils Coil 90 161 - -
Tpr6g3680 1119 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 188 958 - -
Tpr6g3680 1119 SMART ultradead3 522 727 IPR014001 -
Tpr6g3680 1119 MobiDBLite consensus disorder prediction 293 330 - -
Tpr6g3680 1119 Pfam DEAD/DEAH box helicase 528 699 IPR011545 GO:0003676|GO:0005524
Tpr6g3680 1119 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 712 IPR014001 -
Tpr6g3680 1119 Gene3D - 713 887 IPR027417 -
Tpr6g3680 1119 MobiDBLite consensus disorder prediction 382 400 - -
Tpr6g3680 1119 MobiDBLite consensus disorder prediction 1 283 - -
Tpr6g3680 1119 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 188 958 - -
Tpr6g3680 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 861 IPR027417 -
Tpr6g3680 1119 CDD DEADc_DDX46 492 713 - -
Tpr6g3680 1119 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 658 666 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3680 Tpr-Chr6 40508253 40513911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3680 490 865 Eukaryotic Initiation Factors Gene Family AT3G19760 32.895 4.44e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3680 K12811 - gmx:100784306 1498.8