Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3645 ATGTCCTCTCCACACAGTTACTTCACCAATCTTGGCCTTGGCTACTCCATAGCCATAACCCTCGCTTTTCTTGTCCTCCTCGCCACTCTAATCCTCTCTTTCTACCTCTGTTGCCGCAAAAACAATAATCCCAACAACAATAACAACACTCTTAACTACACTGACGGCATTGTTTTGCGACTTGACACATTCATAGCTGAAAACGATGAAGAAAATCAACTTGGAGAAGAGAACACAGTAATGGGTCTAGAAGACAATGTTATAAATTCGTATCCGAGGTTTCAGTTTAGCAGAGACAGTGCAACTGTTTTGGGACAGAACCCAACATGTTCTATTTGTTTGTGTGAGTACAAGGATTCAGAGATGCTGAGGATGATGCCTGAATGTCGTCATTACTTTCATCTCTATTGTCTTGATTCGTGGTTGAAGCTTAATGGGTCTTGTCCTGTTTGCCGAAACTCGCCGCTTCCGACACCACTTTCTACTCCACTTCAAGAGGTTGTTCCGCTTTCTCAGTATGGTGATGATCGGAGACGAAGGAGGTGA 546 0.4359 MSSPHSYFTNLGLGYSIAITLAFLVLLATLILSFYLCCRKNNNPNNNNNTLNYTDGIVLRLDTFIAENDEENQLGEENTVMGLEDNVINSYPRFQFSRDSATVLGQNPTCSICLCEYKDSEMLRMMPECRHYFHLYCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYGDDRRRRR* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3645 181 PANTHER RING-H2 FINGER PROTEIN ATL67 3 180 IPR044289 GO:0016567|GO:0016740
Tpr6g3645 181 SMART ring_2 110 151 IPR001841 -
Tpr6g3645 181 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Tpr6g3645 181 Pfam Ring finger domain 109 152 IPR001841 -
Tpr6g3645 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 156 IPR013083 -
Tpr6g3645 181 CDD RING-H2_PA-TM-RING 109 152 - -
Tpr6g3645 181 PANTHER RING-H2 FINGER PROTEIN ATL67 3 180 - -
Tpr6g3645 181 SUPERFAMILY RING/U-box 109 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3645 Tpr-Chr6 39755698 39756862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3645 1 171 C3H Transcription Factor Family AT5G07040 38.012 1.23e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3645 - - lja:Lj1g3v2807930.1 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3645 6 39755698 39756862 Tpr6g3645 6 39755698 39756862 ECH
Tpr6g3645 6 39755698 39756862 Tpr5g1366 5 26476912 26477952 PCT