Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3629 ATGGCTCCTGGAGGCAGTATTTTCAAAGAAGTTCTTGAATCTCACGTGATGTCATCAGATTATGAAACTGGCAAGGCTAAATCTGAGGCCAAGATTAACAGTACACTTACAAAATCTACTAGTGTTGGGTTGAATGGAAAGAATGGAACTAGTTCAAAGAATGGTGTGCATGACTTACTTGGCTGCCCTGTCTGCAAAAATTTGATGTATCCCCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTCAAATTGTAAGATTGAAGTTCATAATATCTGCCCAACATGTCACCATGATCTTGGAAATATAAGGTGTTTAGCTCTTGAGAAAGTCGCAGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGTTGTAGTGATATATTTCCTTACTATGCTAAACTTAAGCACGAGCAAAATTGCGGATTTCGTCCTTACAATTGTCCCTATGCTGGATCTGAGTGCTCTGCAATTGGTGATATTTCATATCTTGTTGCCCATCTCAAGCATGACCACAAGGTTGACATGCATGATGGATTTACATTCAATCATCGATATGTCAAAACAAATCCACATGAAGTTGAAAATGCTACATGGATGCTAACTGTTTTCAATTGTTATGGAAAGCATTTTTGCTTGCACTTTGAGGCTTTCCAGCTTGGCACGGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGCTACAGCTTAGAAGTCGGTGCAAACGGGCGCAAACTTATATGGCAAGGAATTCCTCGGAGCATTCGTGACAGTCATAGTAAAGTTAGAGACAGTCAAGACGGACTTATAATTCAGAGAAATCAAGCCCTTTATTTTTCTGGTGGCGATAAACAGGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAAAGAAGATTGA 933 0.3987 MAPGGSIFKEVLESHVMSSDYETGKAKSEAKINSTLTKSTSVGLNGKNGTSSKNGVHDLLGCPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNICPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCSDIFPYYAKLKHEQNCGFRPYNCPYAGSECSAIGDISYLVAHLKHDHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGANGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3629 310 SUPERFAMILY RING/U-box 55 104 - -
Tpr6g3629 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Tpr6g3629 310 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Tpr6g3629 310 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr6g3629 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 168 IPR013083 -
Tpr6g3629 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 114 IPR013083 -
Tpr6g3629 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 309 - -
Tpr6g3629 310 SUPERFAMILY TRAF domain-like 115 307 - -
Tpr6g3629 310 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Tpr6g3629 310 CDD RING-HC_SIAHs 62 97 - -
Tpr6g3629 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3629 Tpr-Chr6 39506969 39510428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3629 1 310 C3H Transcription Factor Family AT2G41980 75.806 5.08e-180 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3629 K04506 - gmx:100813966 587.415