Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr6g3629 | ATGGCTCCTGGAGGCAGTATTTTCAAAGAAGTTCTTGAATCTCACGTGATGTCATCAGATTATGAAACTGGCAAGGCTAAATCTGAGGCCAAGATTAACAGTACACTTACAAAATCTACTAGTGTTGGGTTGAATGGAAAGAATGGAACTAGTTCAAAGAATGGTGTGCATGACTTACTTGGCTGCCCTGTCTGCAAAAATTTGATGTATCCCCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTCAAATTGTAAGATTGAAGTTCATAATATCTGCCCAACATGTCACCATGATCTTGGAAATATAAGGTGTTTAGCTCTTGAGAAAGTCGCAGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGTTGTAGTGATATATTTCCTTACTATGCTAAACTTAAGCACGAGCAAAATTGCGGATTTCGTCCTTACAATTGTCCCTATGCTGGATCTGAGTGCTCTGCAATTGGTGATATTTCATATCTTGTTGCCCATCTCAAGCATGACCACAAGGTTGACATGCATGATGGATTTACATTCAATCATCGATATGTCAAAACAAATCCACATGAAGTTGAAAATGCTACATGGATGCTAACTGTTTTCAATTGTTATGGAAAGCATTTTTGCTTGCACTTTGAGGCTTTCCAGCTTGGCACGGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGCTACAGCTTAGAAGTCGGTGCAAACGGGCGCAAACTTATATGGCAAGGAATTCCTCGGAGCATTCGTGACAGTCATAGTAAAGTTAGAGACAGTCAAGACGGACTTATAATTCAGAGAAATCAAGCCCTTTATTTTTCTGGTGGCGATAAACAGGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAAAGAAGATTGA | 933 | 0.3987 | MAPGGSIFKEVLESHVMSSDYETGKAKSEAKINSTLTKSTSVGLNGKNGTSSKNGVHDLLGCPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNICPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCSDIFPYYAKLKHEQNCGFRPYNCPYAGSECSAIGDISYLVAHLKHDHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGANGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED* | 311 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr6g3629 | 310 | SUPERFAMILY | RING/U-box | 55 | 104 | - | - | |
Tpr6g3629 | 310 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 309 | - | - | |
Tpr6g3629 | 310 | ProSiteProfiles | Zinc finger RING-type profile. | 62 | 98 | IPR001841 | - | |
Tpr6g3629 | 310 | Pfam | Seven in absentia protein family | 104 | 303 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Tpr6g3629 | 310 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 168 | IPR013083 | - | |
Tpr6g3629 | 310 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 114 | IPR013083 | - | |
Tpr6g3629 | 310 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE | 1 | 309 | - | - | |
Tpr6g3629 | 310 | SUPERFAMILY | TRAF domain-like | 115 | 307 | - | - | |
Tpr6g3629 | 310 | ProSiteProfiles | Zinc finger SIAH-type profile. | 115 | 175 | IPR013010 | GO:0008270 | |
Tpr6g3629 | 310 | CDD | RING-HC_SIAHs | 62 | 97 | - | - | |
Tpr6g3629 | 310 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 303 | IPR008974 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr6g3629 | Tpr-Chr6 | 39506969 | 39510428 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr6g3629 | 1 | 310 | C3H Transcription Factor Family | AT2G41980 | 75.806 | 5.08e-180 | 497 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr6g3629 | K04506 | - | gmx:100813966 | 587.415 |