Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3602 ATGGGGTTTAGGGTTTTAATGAGTTTATGGGTGAGTGAGAACGGTTCGAAGAAGGTCCTTGGGATTGAACGAAGGGTACTTAAGGCAGTTGCTATTATTAAGATGTCAGAACAACAGCCCGCTATCCGAGTGCAATCGGCAAATATTGAAGGTAAAATGGATGACGACTTCTCAGATTTGTGTGTGATATGCATTGCTCAGAAATACAATGTTGCTTTTGTCCCGTGCGGGCATATGTGTTGCTGTACAACTTGTTCTCGACCCTTAAAAATGTGCCCTCTTTGCCGCGGACAGATAAAGCAAGTTATACGAATTTTCTATCCCTAA 327 0.4251 MGFRVLMSLWVSENGSKKVLGIERRVLKAVAIIKMSEQQPAIRVQSANIEGKMDDDFSDLCVICIAQKYNVAFVPCGHMCCCTTCSRPLKMCPLCRGQIKQVIRIFYP* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3602 108 Pfam Zinc finger, C3HC4 type (RING finger) 59 102 - -
Tpr6g3602 108 ProSiteProfiles Zinc finger RING-type profile. 61 96 IPR001841 -
Tpr6g3602 108 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 54 106 - -
Tpr6g3602 108 SUPERFAMILY RING/U-box 59 103 - -
Tpr6g3602 108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 107 IPR013083 -
Tpr6g3602 108 PANTHER OS06G0252500 PROTEIN 54 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3602 Tpr-Chr6 39094074 39095295 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3602 61 105 C3H Transcription Factor Family AT3G06140 36.735 1.21e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3602 K15688 - tcc:18613412 92.4337