Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3597 ATGGGCAGGAATGTGGACATTCTTAAATCTGTGACTCGCGTCAAGCAACTGAAGGAACTAGCTCAACTATTAGATACTCGAAATTCACCGTTGCTCGTTGCAATTTCTGGAAAAGTTGCCGCTGATAGCACAATTATATGTGAATTAAGTGGTTTAGCGAGTGTAATTGTTGAAGATACGGTAGAGCAACATTTTCTTAAACATGAGAAGTGGGATTGGAAAGACCATTCTCCTGTAACGTCGTTCGCGAGTAAAGAGGTTTCTTGGTATCTGGAAGATGCAACTGGTTGTGTGGATGTGGTTGGAGCTCAGCAGGCCATAGATTTTATGTTACCTTTTCAAAAGGAAATATTTAAACAATCAAAACCATGGATGATACATAGAATATTCAATTATTTCCGAGGTCTCAAGGAGCTTGGTTTTAAGAGAATTGAACGAACACTTCCAATCAACACTTCCTTGACAGTTATTGGTGAAGTTTCTAAAGATGATGCCGGCACCATTCGGATTCAAAAACCCCAGTCAGGACCATTTTATGTCTCTCCCAACACAATTGATGATCTTATAATTGCTAATCATGGGGATTTCGTCAGGTGGTGTAAGTATGCATCGATTGGATTTTCAATATTTGGTTCTTGTATAATAGCTATGCATACTATTCAATACATCTTGACATGGCGACGACAATGTGAAATGCATAAAAGGGTACTTAAGGCAGCTGCTATTATTAAGATGTCAGAACAACAGCCCGCTATCCGAGTGCAATCGGCAAATATTGAAGGTAAATTGCTAAAAGTCTATACTATTAATTTTGTAATGATTGTTTCAATAGTACGCGGTTTGCTAGAAAGGATTAGCAGCACAGCTTGTTGCTCGTTTGTCTTTCACTTATGTGTAAGAAATTGTGACAATTTCTCAGGTAAAATGGATGACGACTTCTCAGATTTGTGTGTGATATGCATTGCTCAGAAATACAATGTTGCTTTTGTCCCGTGCGGGCATATGTGTTGCTGTACAACTTGTTCTCGACCCTTAAAAATGTGCCCTCTTTGCCGCGGACAGATAAAGCAAGTTATACGAATTTTCTATCCCTAA 1095 0.389 MGRNVDILKSVTRVKQLKELAQLLDTRNSPLLVAISGKVAADSTIICELSGLASVIVEDTVEQHFLKHEKWDWKDHSPVTSFASKEVSWYLEDATGCVDVVGAQQAIDFMLPFQKEIFKQSKPWMIHRIFNYFRGLKELGFKRIERTLPINTSLTVIGEVSKDDAGTIRIQKPQSGPFYVSPNTIDDLIIANHGDFVRWCKYASIGFSIFGSCIIAMHTIQYILTWRRQCEMHKRVLKAAAIIKMSEQQPAIRVQSANIEGKLLKVYTINFVMIVSIVRGLLERISSTACCSFVFHLCVRNCDNFSGKMDDDFSDLCVICIAQKYNVAFVPCGHMCCCTTCSRPLKMCPLCRGQIKQVIRIFYP* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3597 364 CDD RING-HC_LRSAM1 316 355 - -
Tpr6g3597 364 PANTHER - 2 331 IPR044231 GO:0004842|GO:0016567
Tpr6g3597 364 ProSiteProfiles Zinc finger RING-type profile. 317 352 IPR001841 -
Tpr6g3597 364 Pfam Zinc finger, C3HC4 type (RING finger) 315 358 - -
Tpr6g3597 364 SUPERFAMILY RING/U-box 315 359 - -
Tpr6g3597 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 363 IPR013083 -
Tpr6g3597 364 Pfam E3 Ubiquitin ligase 67 213 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3597 Tpr-Chr6 39049065 39063202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3597 2 241 C3H Transcription Factor Family AT1G63900 48.971 1.51e-72 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3597 K15688 - gmx:100800734 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3597 6 39049065 39063202 Tpr6g3597 6 39049065 39063202 ECH