Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3593 ATGGCTTCTACTCTTGTTCTCCGAAACTCTTCATCTTCTACCTCCAAACGTCTTTCTCCTTTTCTCTTTTCTTCTCAATTCCACACTTCCCTCACTCGTTCGCCGCAATCTCAATCACCTCTCACCAATGATACCACTACTCCTTCTTCTTCCTCCTCCTCCTCCTCCAATCCATGGTGGAGATCCATGGCTACTTTCACCAGAACAAAACCTCATGTTAACGTTGGAACTATTGGACACGTAGATCACGGTAAAACTACACTCACCGCTGCAATCACCAGAGTGCTTGCTGATGAAGGGAATGCTAAAGCTGTTGCTTTTGATGAAATTGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATTACAATTGCTACGGCTCATGTTGAGTATGAGACTGCAAAACGGCATTATGCACATGTAGATTGCCCTGGACATGCCGATTATGTTAAAAATATGATTACTGGAGCTGCCCAAATGGATGGCGGCATCCTTGTTGTATCTGCTCCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTAGCTCGCCAAGTTGGTGTACCATCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAACTTCTACAAATTCCCTGGGGATGATATCCCTATCATTAGAGGTTCCGCATTGTCTGCGTTACAAGGTACAAATGAAGAGATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTAGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGTCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACTGGAGTCGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTAAAACGTGAAGACATTCAACGTGGTCAGGTCATTGCTAAGCCCGGTTCTGTAAAAACATCCAAGAAATTTGAGGCAGAGATATATGTGCTCACAAAAGATGAGGGTGGGCGACACACTGCTTTCTTCTCTAACTATAGACCTCAGTTTTACTTGAGGACTGCTGATATTACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGGTTATGCCTGGAGACAATGTTACTGCCGTGTTTGAATTGATTTTACCTGTTCCACTTGACAAAGGGCAAAGATTTGCATTGAGAGAGGGCGGCAGAACAGTTGGTGCAGGTGTGGTGTCGAAAGTGATGAACTGA 1377 0.4379 MASTLVLRNSSSSTSKRLSPFLFSSQFHTSLTRSPQSQSPLTNDTTTPSSSSSSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGNAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDDIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELILPVPLDKGQRFALREGGRTVGAGVVSKVMN* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3593 458 MobiDBLite consensus disorder prediction 32 58 - -
Tpr6g3593 458 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 70 266 IPR000795 GO:0003924|GO:0005525
Tpr6g3593 458 Pfam Elongation factor Tu GTP binding domain 70 263 IPR000795 GO:0003924|GO:0005525
Tpr6g3593 458 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 367 458 IPR009001 -
Tpr6g3593 458 Gene3D Translation factors 402 457 - -
Tpr6g3593 458 PRINTS GTP-binding elongation factor signature 74 87 IPR000795 GO:0003924|GO:0005525
Tpr6g3593 458 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Tpr6g3593 458 PRINTS GTP-binding elongation factor signature 138 148 IPR000795 GO:0003924|GO:0005525
Tpr6g3593 458 PRINTS GTP-binding elongation factor signature 154 165 IPR000795 GO:0003924|GO:0005525
Tpr6g3593 458 PRINTS GTP-binding elongation factor signature 191 200 IPR000795 GO:0003924|GO:0005525
Tpr6g3593 458 Hamap Elongation factor Tu [tuf]. 61 458 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tpr6g3593 458 SUPERFAMILY Translation proteins 267 363 IPR009000 -
Tpr6g3593 458 Gene3D - 62 265 IPR027417 -
Tpr6g3593 458 Gene3D Translation factors 268 398 - -
Tpr6g3593 458 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Tpr6g3593 458 PANTHER ELONGATION FACTOR TU 16 458 - -
Tpr6g3593 458 CDD EF_Tu 71 265 IPR041709 -
Tpr6g3593 458 CDD EFTU_II 273 361 IPR033720 -
Tpr6g3593 458 Pfam Elongation factor Tu domain 2 287 357 IPR004161 GO:0005525
Tpr6g3593 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 288 IPR027417 -
Tpr6g3593 458 CDD EFTU_III 364 453 - -
Tpr6g3593 458 Pfam Elongation factor Tu C-terminal domain 362 456 IPR004160 -
Tpr6g3593 458 TIGRFAM small_GTP: small GTP-binding protein domain 73 210 IPR005225 GO:0005525
Tpr6g3593 458 PANTHER ELONGATION FACTOR TU-RELATED 16 458 - -
Tpr6g3593 458 TIGRFAM EF-Tu: translation elongation factor Tu 62 457 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3593 Tpr-Chr6 39030909 39035400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3593 68 456 Eukaryotic Initiation Factors Gene Family AT5G60390 30.505 1.41e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3593 K02358 - gmx:100791600 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3593 6 39030909 39035400 Tpr6g3593 6 39030909 39035400 ECH