Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3575 ATGTCGAGGATAATTGTGAAGAATCTCCCTAAATATGTTGCAGAGGATCGACTAAGAGAATTGTTTTCTCAGAAAGGAGAAATAACTGATGTCAAGCTTAAGCGTACCAAAAACGGAAAAACTCGCCAATTTGCTTTTATCGGATTTCGTACAGACCAGGAAGCTCAGGAAGCGATTCGATATTTTAATAGATCTTACCTTGACACGCTTAGAATTACTTGCGAGGTGGCTCAAAAACAAGGTGATGCTAATCTTCCTCGTCCATGGAGTCGACATTCAACAAAAAAAGACAATAAAGACAATAAAGTGATCACCCCAGATGCGAACAATCATGCTAGAGCTAAAGGACAAGGAGACAATTCTAAGGACATTGATGACCCAAAGCTTAAAGATTTTCTTCAGGTCATGCAACCTCGGGCTAAGTCTAAGTTGTGGGGAAATGATACTTCATTTGCATCCAATGATGGTAACAGCCAAGCAACATTGAATAAGGAAACCGAAGGTACATTGGTTGCAAACCATCCTATCTTGAGCAACTCACAAGTAGATGGAATACCGCCAAATAATCCTGAATCCGACAAGTCACGTGAGCTTAAGCATGGTGGATTAATTTCTGATATGGATTATTTCAAGAGTAAAGTGACAACAGAATGGTCTGATTCTGAAAGCAGTGATGATGAAAACAACGATGAAAACAATGATTCGGAATCTGATGACGAGGATGACAAAGATAACCATAGTCATGCTACTAAACGTGAAGAAAATTGTGGCAATTACCCTTCTGAAAAAACCCCAAGAAGTGGTGCTCAAGAGTTAGAAGTAGAAGGGAAAGAAGATACTTTTCAAGAGGATGTTGCCAATGATAAGTCTCAGGTTAATGTAACTGAGGAAGGGGAGCAATCATCAAATCCAGAAGATAAGAAAGAAGTTTCTGAGTCGTGTCGACTGTTTGTCCGTAATCTGCCATATACGACCACTGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGTAGTGTCTCACAGGTTCATTTAGTTGTTGATAGGGAGACAAAACGATCCAAAGGAATAGCTTATATTCATTTTTCAGTTCCAGAATTTGCAACCAGGGCGCTAGAAGAGTCAGACAATTCAATCTTCCAAGGGAGATTATTGCATGTCATGCCAGCTATACCAAGACATTCAAACAATGAAGAGAACAATGTCTCCAAAGACCAAGGTTCTAAAACTCTCAAACAACGAAGAGAGGAAGAGAGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGTCCTGATACAGTTGTTGAAAATGTTGCTCGGAAATATGGTGTTAGTAAGAGCGATTTTATGGATCGAGAAGCTAATGATCTTGCTGTACGTATTGCCCTGGGAGAAACTCAAGTGATTTCAGAAACAAAAAATGCATTTAAGAAAGCTGGAGTGAATGTGGAGTCTTTGGAGGAGATTGCCAAGGGTAAAGTTGATGGTGTAAAAAGAAGTAACCATGTAATTTTAGTGAAAAATTTGCCCTATGGTTCTACCGAAAATGAACTCGCAAATATGTTTGGGAAATTTGGTAGTTTGGAAAAAATAATTCTTCCCTCAACAAAAACATTGGCCCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTAAAGTTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTGTACTTGGAGTGGGCTCCTTCCAATGTTCTTAGCCCAAAATCAACATCTGACGATAATGAGATGAATAGTGGAATTGGTGAAAAGGATGTCAAGCGACAGATATTGGAGCAAGATGTGGAAAGAATATCAGATATGGATATTGATCCAGACAGAATAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAACTGATGAGAGTTTGAAGGAGCATTTCAGCAAACACATGAAAGAGGGACGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCACAGAGACCGCTACAAGTGTTTGCAACAATTTACAGGGGACTATTTTGGACAGTCATGCTCTTATTTTACAACTTTGTCATGCCAAGAGTGATGGTAAAGTACAAAAGAAAGTTGAGAAAGACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTATTTAGCCCGTTTGGCCAGGTTAAAAGCTTAAGGTTGCCAATGAAGTTCGGAAATCATAGAGGATTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCACTTACGGCACTCTCAAGTACTCACTTGTATGGAAGACATCTGGTTATAGAGAGAGCGAAAGAAGGCGAGAGTTTGGAGGAACTGCGGGCTCGAACTGCTGCTCAATTTAATGAACATAGTGGATTCCAAGATGCTAACTTATCCAGGAAAAGGAAGGCCATCAGTATGTTTGATGAAGAAAATATGAAGTTTGGAAGGTTTGATTAG 2559 0.3986 MSRIIVKNLPKYVAEDRLRELFSQKGEITDVKLKRTKNGKTRQFAFIGFRTDQEAQEAIRYFNRSYLDTLRITCEVAQKQGDANLPRPWSRHSTKKDNKDNKVITPDANNHARAKGQGDNSKDIDDPKLKDFLQVMQPRAKSKLWGNDTSFASNDGNSQATLNKETEGTLVANHPILSNSQVDGIPPNNPESDKSRELKHGGLISDMDYFKSKVTTEWSDSESSDDENNDENNDSESDDEDDKDNHSHATKREENCGNYPSEKTPRSGAQELEVEGKEDTFQEDVANDKSQVNVTEEGEQSSNPEDKKEVSESCRLFVRNLPYTTTEEELEEHFSQFGSVSQVHLVVDRETKRSKGIAYIHFSVPEFATRALEESDNSIFQGRLLHVMPAIPRHSNNEENNVSKDQGSKTLKQRREEERKAAEASGDTRAWNSLFMRPDTVVENVARKYGVSKSDFMDREANDLAVRIALGETQVISETKNAFKKAGVNVESLEEIAKGKVDGVKRSNHVILVKNLPYGSTENELANMFGKFGSLEKIILPSTKTLALVVFLEAAEAKVAFRGLAYKRYKDAPLYLEWAPSNVLSPKSTSDDNEMNSGIGEKDVKRQILEQDVERISDMDIDPDRIEARSLFVKNLNFKTTDESLKEHFSKHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNNLQGTILDSHALILQLCHAKSDGKVQKKVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQVKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLEELRARTAAQFNEHSGFQDANLSRKRKAISMFDEENMKFGRFD* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3575 852 SMART rrm1_1 510 577 IPR000504 GO:0003723
Tpr6g3575 852 SMART rrm1_1 730 801 IPR000504 GO:0003723
Tpr6g3575 852 SMART rrm1_1 3 75 IPR000504 GO:0003723
Tpr6g3575 852 SMART rrm1_1 630 708 IPR000504 GO:0003723
Tpr6g3575 852 SMART rrm1_1 315 388 IPR000504 GO:0003723
Tpr6g3575 852 CDD RRM3_RBM19_RRM2_MRD1 315 388 - -
Tpr6g3575 852 CDD RRM5_RBM19_like 629 710 IPR034423 -
Tpr6g3575 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 729 805 IPR000504 GO:0003723
Tpr6g3575 852 MobiDBLite consensus disorder prediction 408 425 - -
Tpr6g3575 852 MobiDBLite consensus disorder prediction 82 127 - -
Tpr6g3575 852 SMART rrm2_1 3 75 IPR003954 GO:0003676
Tpr6g3575 852 SMART rrm2_1 315 388 IPR003954 GO:0003676
Tpr6g3575 852 MobiDBLite consensus disorder prediction 89 106 - -
Tpr6g3575 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Tpr6g3575 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 509 581 IPR000504 GO:0003723
Tpr6g3575 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 629 712 IPR000504 GO:0003723
Tpr6g3575 852 SUPERFAMILY RNA-binding domain, RBD 306 403 IPR035979 GO:0003676
Tpr6g3575 852 Gene3D - 1 123 IPR012677 -
Tpr6g3575 852 Gene3D - 281 429 IPR012677 -
Tpr6g3575 852 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Tpr6g3575 852 SUPERFAMILY RNA-binding domain, RBD 725 808 IPR035979 GO:0003676
Tpr6g3575 852 CDD RRM6_RBM19_RRM5_MRD1 729 803 - -
Tpr6g3575 852 MobiDBLite consensus disorder prediction 393 425 - -
Tpr6g3575 852 MobiDBLite consensus disorder prediction 221 240 - -
Tpr6g3575 852 Gene3D - 624 724 IPR012677 -
Tpr6g3575 852 MobiDBLite consensus disorder prediction 215 311 - -
Tpr6g3575 852 CDD RRM4_RBM19_RRM3_MRD1 509 580 - -
Tpr6g3575 852 MobiDBLite consensus disorder prediction 241 259 - -
Tpr6g3575 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 392 IPR000504 GO:0003723
Tpr6g3575 852 MobiDBLite consensus disorder prediction 268 285 - -
Tpr6g3575 852 CDD RRM1_MRD1 2 77 - -
Tpr6g3575 852 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 830 - -
Tpr6g3575 852 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 830 - -
Tpr6g3575 852 SUPERFAMILY RNA-binding domain, RBD 506 595 IPR035979 GO:0003676
Tpr6g3575 852 Gene3D - 725 828 IPR012677 -
Tpr6g3575 852 Gene3D - 502 605 IPR012677 -
Tpr6g3575 852 SUPERFAMILY RNA-binding domain, RBD 617 715 IPR035979 GO:0003676
Tpr6g3575 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 386 IPR000504 GO:0003723
Tpr6g3575 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 731 798 IPR000504 GO:0003723
Tpr6g3575 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 511 572 IPR000504 GO:0003723
Tpr6g3575 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 69 IPR000504 GO:0003723
Tpr6g3575 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 631 705 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3575 Tpr-Chr6 38828966 38837486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3575 630 851 Eukaryotic Initiation Factors Gene Family AT1G49760 25.446 7.11e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3575 K14787 - gmx:100798742 1162.13