Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3574 ATGAGCTATCAAATGAATGGTGAAAATGCAAGAAGAGATTTGAAAAGAAAGCTCCCTCAGATGGATCGAGGGCATGAACCGAGAACTTATAATACAAATTCTACACCTTATGATAGGAATGCACTTCCTCCTGGTTGGTTAGACTGCCCAGCACATGGGCAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCCCTTGGTGAATCATTCAATGATTACATTCCAAATAAAAGATATACTCCCAAGCAAGCAATTAATCAACAGAGAGCTTTAGGTAGAGAACTTGGTTTAGTGATTGATCTTACAAATACTACTCGTTACTATCAATTATCAGATTGGAAAAAAGAAGGGATTGGCCATGTAAAGATAAGATGCAAAGGAAGAGATTCTGTACCCGATGATGAATCTGTAGAAAAGTTTTGCAATGAGGTTCTGGATTTTTGCTCTCGAAGACCAAACACAAAGAAATATATACTTGTACACTGCACTCATGGGCATAATCGTACAGGTTATATGATTGTTAGCTTTCTTGTGCGTACAGAATCAATTTCTGTCACTGAGGTGAGTAAAACCATAAATTGTTCAAAGGTTTGTTTCAACAGCCACTTTACACTGATAACTTTTATGTTGTGCACATTTATGCCTGTTACCTTCCAGGCAATAAATAAATTTGCTCAGGCACGTCCCCCAGGAATTTACAAGCAGGATTATATTGACGCCCTGTACATGTATTTTAATGAAAATAAGCCTGAAAATCTTGTTTGTCCACAAACTCCAGAATGGAAGAGCCTCCCTGACCCTGACTATCATGGCGTGTCTGTCTCAGCTACAGACAATTATACAGACATTTTGAATCAGGAGAATATTGTGAGGAATGAAATAATGACAAATGATGATGTTTTGGGAGATCCTATTCCTTCAAACCAGCTACGTCCAATGCAAGAAGTTTGTTATCAACTGCTCAAGATGGGCAAAGGGGGAAAAGGCTTTCCCGGATCACACCCTGTTTCTCTGAACAGGGAAAATTTGCAACTCTTAAGACAGAGGTATTACTACGCCACATGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATTTAATTGACAGAAAATTTCTTTTCCAAAGGATCTGTATGCGGTTTCCTTGCAGATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCACATACACATAAGCAAGAAAGAAGATACCTCATTTATGATCTGATAGCAATCAATCAAGTTTCTCTGACAGAGATGCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGGAACATGGAAAGAGAAGCCCTTTCCAAGAGTATAAGTCCTTATTATAGATATGACTTGGAACCATTTGGTGTGAGGAGGAAGGGTTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACATTCATCAGATGGCCTTGTATTCCAGGGTTGGGATGATCCCTATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTTCACTTTGAGGTGGGAGCCGGTGACCGACCCCTGCTTTTTCTGTTTGAACGCGGAAAGAGGAAATTAATGGAAGGGAATGCTGTTATTTTTAAAGATGCGACGGATATTTCTGCCTATTCAGGGAGGATTATTGAGTGCTACTGGGATGCTGCGGAGCATCACTGGGTCTGTATGCGGATAAGAGCCGATAAAGCAACTCCAAATGATATCAATACTTATAGAAAGGTAATGCGAAGCATAAAGGATAATATCACAGAAGAGGTCCTGTTGAATGAGATTAGTGAGATCATTCGGCTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGAATATGGTCTCTTCACGACGCAAGTGA 1992 0.4031 MSYQMNGENARRDLKRKLPQMDRGHEPRTYNTNSTPYDRNALPPGWLDCPAHGQELGCIIPSKVPLGESFNDYIPNKRYTPKQAINQQRALGRELGLVIDLTNTTRYYQLSDWKKEGIGHVKIRCKGRDSVPDDESVEKFCNEVLDFCSRRPNTKKYILVHCTHGHNRTGYMIVSFLVRTESISVTEVSKTINCSKVCFNSHFTLITFMLCTFMPVTFQAINKFAQARPPGIYKQDYIDALYMYFNENKPENLVCPQTPEWKSLPDPDYHGVSVSATDNYTDILNQENIVRNEIMTNDDVLGDPIPSNQLRPMQEVCYQLLKMGKGGKGFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFLFQRICMRFPCRYSNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTEMPFYERWKLLEKEVIEPRNMEREALSKSISPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGAGDRPLLFLFERGKRKLMEGNAVIFKDATDISAYSGRIIECYWDAAEHHWVCMRIRADKATPNDINTYRKVMRSIKDNITEEVLLNEISEIIRLPLYADRIQRDIKAHQNMVSSRRK* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3574 663 Gene3D - 570 640 IPR012340 -
Tpr6g3574 663 CDD RNA_5'-triphosphatase 45 243 - -
Tpr6g3574 663 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 196 IPR000387 GO:0016311|GO:0016791
Tpr6g3574 663 MobiDBLite consensus disorder prediction 1 37 - -
Tpr6g3574 663 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 218 262 IPR029021 -
Tpr6g3574 663 CDD Adenylation_mRNA_capping 308 533 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tpr6g3574 663 PANTHER MRNA-CAPPING ENZYME-LIKE 218 663 - -
Tpr6g3574 663 PANTHER MRNA-CAPPING ENZYME-LIKE 5 194 - -
Tpr6g3574 663 Gene3D DNA ligase/mRNA capping enzyme 296 532 - -
Tpr6g3574 663 Pfam mRNA capping enzyme, C-terminal domain 568 631 IPR013846 -
Tpr6g3574 663 PANTHER MRNA-CAPPING ENZYME 5 194 - -
Tpr6g3574 663 PANTHER MRNA-CAPPING ENZYME 218 663 - -
Tpr6g3574 663 PIRSF mRNA_capping_HCE 29 195 IPR017074 GO:0004484|GO:0006370|GO:0140818
Tpr6g3574 663 PIRSF mRNA_capping_HCE 191 663 IPR017074 GO:0004484|GO:0006370|GO:0140818
Tpr6g3574 663 Pfam mRNA capping enzyme, catalytic domain 334 532 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tpr6g3574 663 Pfam Dual specificity phosphatase, catalytic domain 94 206 IPR000340 GO:0008138|GO:0016311
Tpr6g3574 663 Gene3D Protein tyrosine phosphatase superfamily 17 267 IPR029021 -
Tpr6g3574 663 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Tpr6g3574 663 MobiDBLite consensus disorder prediction 9 24 - -
Tpr6g3574 663 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 193 IPR029021 -
Tpr6g3574 663 SUPERFAMILY Nucleic acid-binding proteins 535 648 IPR012340 -
Tpr6g3574 663 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 323 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3574 Tpr-Chr6 38796833 38805512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3574 31 653 Protein tyrosine phosphatase (PTP) family AT3G09100 59.306 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3574 - K13917 mtr:MTR_7g094670 1160.98