Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3557 ATGGCGCCAACTCTGTATAAAAATGAAGTGAAGCATTCGAAATTGAACTTCCGCAACCATTTTCATTTTCTAATTTCTAATCTAATGGATCTTCGCACGCGTAACATGAAGCGAAAACTCGATTTCACTGAACAAGATGAATTACCAAACAATCCCCAACGTCGTCGTTTAGATCTTCCCGCCGATATTTCCAAACGGATTCATTTCCTCAAATCTGCTTTTTCATCATCCGATTCAGATCGTTGCTCTGCCAGAAGTGCTCTCTTCGTTCTCACCGAGTTCGCTAAAGACGAGGATATTGTGGATGTTATAGTGGATTGTGGTGCTGTTCCTGCTTTGGTGAAGGTTCTGGAGACGGCGAACGCGAAGGTGAGTGATGATGGTGATTGTCATGCTGATTGTCATGCCGATCGTCATCGGTATGAAATGGAGAAAGATTGCGCGTTCGTCCTTGGTCTACTCGCTGTCAAGCAAGAGTATCAACAACTCATTGTTGATGCTGGAGCCTTGCCCCATCTTGTAGAATTGTTAAAGAGACCCAAAAGCCCTATCATTTCTCAAGCTCTTTTTTCGGGTATTCTTAGAAAAGCAGCTGACACAATAACCAACCTTGCCCATGAAAATACCAGCATCAAGACCCTTGTCAGGTTGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGATACCAAGGTACAGAGAGCAGCTGCAGGGGCATTGCGAACTCTTGCATTTCAAAATGCTGAAAATAAAAACCAGATTATTCAATGGAATGCGTTGCCCACTCTTGTACTGATGCTTGGATCAGAGGATCCTACAATACATTATGAGGCGGTTGGTGTGATCGGAAATTTGGTCCACTCTTCGCCGGAAATTAAGAAAGAGGTTCTTCTAGCCGGGGCTTTACAGCCAGTTATTTGCTTACTAAGTTCCTGCTGTTTGGAGAGCCAACGAGAAGCAGCTCTTTTAATCGGTCAATTTGCTACAACGGATTCAGATTGCAAGATTCACATTGCCCAAAGAGGGGCGATAAAACCCTTAATTGACATGCTTGAGTCTTCAGATTTACAGCTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCCCAGGACTCACACAATCAAGCTGGTATCGCTTACAATGGAGGTATAGAGCCTCTGCTCAAGCTTCTTGGCACAAAGAATACTTCTGTCCAACACAATGCATCTTTTGCTCTTTATGCTCTTGCGGATAATGAGGACAATGTTGCCGTTATTATTAAGGCCGGCGGTTTTCAAAAACTGCATGAGGGACATTTCAATGCTCAACCCACTCAAGAGTGTGTAACAAAGACATTAAAAAGATTGGAAGAGAAGATGCAAGGGCGAGTACTGAAACACATGCTATATCTTATGCGCACTGGGGACAAGGGTGTTAAAATACGAGTAGTTCTTGCTCTTGCACATTTATGTTCCCCTGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAGCTTCTTCAATCTACAAACCAAAAGCAGAAGGGTGAAGCTTCAGCAGCCCTTCACGCAATGGCTGCCAAAGGAATGCGTGCCTCTATTCTTGATCCTGCTCCTACATCACCAACTCCCCAGGTTTACATGAGCGAGGAATATGTAAACAATCCTATACTTTCTGACGTCACATTCATAGTTGAAGGAAAAAGGTTTTATGCTCATAGGTCTTGTTTACTTTCTTCTGATATATTTCATGCAATGTTCGATGGAGGTTATAGGGAAAAGGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACTGGAACAGTGGATGTTGATTTGGATGTTGCTGTGGACCTCCTTAAAGCTGCAGATCAATATCTTCTTGACGGTCTTAAGCGTATTTGTGAATATACCATTTCTAAGGGTATTTCTGTGGAAAATGTTTCACTAATGTACGCGATGTCAGAGACTTTCAATGCTACATCGTTAAGACATTCATGCATACTCTTTGTTCTGAATCAATTTGATAGCTTGTGTTCCAAACCATGGTATTCTCACTTTATTCATTGCATTGTGCCAGACATTCACAAATTCTTCTCAACTTTACTTACCACTAAATTTGGTCTTGTGGATCCTTAG 2184 0.4158 MAPTLYKNEVKHSKLNFRNHFHFLISNLMDLRTRNMKRKLDFTEQDELPNNPQRRRLDLPADISKRIHFLKSAFSSSDSDRCSARSALFVLTEFAKDEDIVDVIVDCGAVPALVKVLETANAKVSDDGDCHADCHADRHRYEMEKDCAFVLGLLAVKQEYQQLIVDAGALPHLVELLKRPKSPIISQALFSGILRKAADTITNLAHENTSIKTLVRLEGGIPPLVELLEFNDTKVQRAAAGALRTLAFQNAENKNQIIQWNALPTLVLMLGSEDPTIHYEAVGVIGNLVHSSPEIKKEVLLAGALQPVICLLSSCCLESQREAALLIGQFATTDSDCKIHIAQRGAIKPLIDMLESSDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLKLLGTKNTSVQHNASFALYALADNEDNVAVIIKAGGFQKLHEGHFNAQPTQECVTKTLKRLEEKMQGRVLKHMLYLMRTGDKGVKIRVVLALAHLCSPDDRKTIFIDNNGLELLLELLQSTNQKQKGEASAALHAMAAKGMRASILDPAPTSPTPQVYMSEEYVNNPILSDVTFIVEGKRFYAHRSCLLSSDIFHAMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVDVDLDVAVDLLKAADQYLLDGLKRICEYTISKGISVENVSLMYAMSETFNATSLRHSCILFVLNQFDSLCSKPWYSHFIHCIVPDIHKFFSTLLTTKFGLVDP* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3557 727 Gene3D - 377 456 IPR011989 -
Tpr6g3557 727 Pfam Armadillo/beta-catenin-like repeat 158 205 IPR000225 GO:0005515
Tpr6g3557 727 Pfam Armadillo/beta-catenin-like repeat 250 289 IPR000225 GO:0005515
Tpr6g3557 727 Pfam Armadillo/beta-catenin-like repeat 218 247 IPR000225 GO:0005515
Tpr6g3557 727 SMART arm_5 208 248 IPR000225 GO:0005515
Tpr6g3557 727 SMART arm_5 250 290 IPR000225 GO:0005515
Tpr6g3557 727 SMART arm_5 157 206 IPR000225 GO:0005515
Tpr6g3557 727 SMART arm_5 375 415 IPR000225 GO:0005515
Tpr6g3557 727 SMART arm_5 292 332 IPR000225 GO:0005515
Tpr6g3557 727 SMART arm_5 490 530 IPR000225 GO:0005515
Tpr6g3557 727 SMART arm_5 334 374 IPR000225 GO:0005515
Tpr6g3557 727 SMART arm_5 97 156 IPR000225 GO:0005515
Tpr6g3557 727 Pfam BTB/POZ domain 554 655 IPR000210 GO:0005515
Tpr6g3557 727 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Tpr6g3557 727 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 32 720 IPR044282 -
Tpr6g3557 727 Gene3D - 457 539 IPR011989 -
Tpr6g3557 727 ProSiteProfiles BTB domain profile. 562 628 IPR000210 GO:0005515
Tpr6g3557 727 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 261 303 IPR000225 GO:0005515
Tpr6g3557 727 SUPERFAMILY ARM repeat 67 434 IPR016024 -
Tpr6g3557 727 SUPERFAMILY ARM repeat 458 531 IPR016024 -
Tpr6g3557 727 Gene3D - 63 376 IPR011989 -
Tpr6g3557 727 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 32 720 - -
Tpr6g3557 727 SUPERFAMILY POZ domain 553 655 IPR011333 -
Tpr6g3557 727 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 387 IPR000225 GO:0005515
Tpr6g3557 727 Gene3D Potassium Channel Kv1.1; Chain A 549 687 IPR011333 -
Tpr6g3557 727 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 219 254 IPR000225 GO:0005515
Tpr6g3557 727 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 168 219 IPR000225 GO:0005515
Tpr6g3557 727 SMART BTB_4 562 658 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3557 Tpr-Chr6 38609322 38614649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3557 305 531 U-box Gene Family AT1G23030 22.034 1.48e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tpr6g3557 BTB 1.4e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3557 - - csin:114287792 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3557 6 38609322 38614649 Tpr6g3557 6 38609322 38614649 ECH