Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3556 ATGCTTGGATCAGAGGATCCTACAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTGGTCCATTCTTCGCCGGAAATTAAGAAAGAGGTTCTTCTAGCCAGGGCTTTACAGCCAGTTATTTGCTTACTAAGTTCCTGTTGTTTGGAGAGCCAACGAGAAGCAGCTCTTTTAATCGGTCAATTTGCTACAACGGATTCAGATTGCAAGATTCACATTGGCCAAAGAGGGGCGATAAAACCCTTAATTGACATGCTTGAGTCTTCAGATTTACAGCTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCCCGGGACTCGCACAATCAAGCTGGTATCGCCTACAATGGAGGTATAGAGCCTCTGCTCAAGCTTCTTGGCACAAAGAATACTTCTGTCCAACACAATGCATCTTTTGCTCTTTATGCTCTTGCGGATAATGAGGTGAAGTTGGTTTCCTTGTTCTTTACTTGGTCAACATTGTATGCGAAACGGAGATATTTCAATGTTCTAAATAAGATGAATATATATTTGTTTGTAAATTTGTGTAATTTTAATGGAAATGATGTGAAAAGACTATAA 585 0.4034 MLGSEDPTIHYEAVGVIGNLVHSSPEIKKEVLLARALQPVICLLSSCCLESQREAALLIGQFATTDSDCKIHIGQRGAIKPLIDMLESSDLQLREMSTFALGRLARDSHNQAGIAYNGGIEPLLKLLGTKNTSVQHNASFALYALADNEVKLVSLFFTWSTLYAKRRYFNVLNKMNIYLFVNLCNFNGNDVKRL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3556 194 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 149 IPR000225 GO:0005515
Tpr6g3556 194 Gene3D - 1 165 IPR011989 -
Tpr6g3556 194 SMART arm_5 107 147 IPR000225 GO:0005515
Tpr6g3556 194 SMART arm_5 24 64 IPR000225 GO:0005515
Tpr6g3556 194 SMART arm_5 66 106 IPR000225 GO:0005515
Tpr6g3556 194 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 1 155 - -
Tpr6g3556 194 SUPERFAMILY ARM repeat 4 153 IPR016024 -
Tpr6g3556 194 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 77 119 IPR000225 GO:0005515
Tpr6g3556 194 Pfam Armadillo/beta-catenin-like repeat 66 106 IPR000225 GO:0005515
Tpr6g3556 194 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 155 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3556 Tpr-Chr6 38604558 38605645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3556 44 152 U-box Gene Family AT2G23140 32.143 1.95e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3556 - - tss:122642614 242.276