Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3543 ATGCCAACTACAATGACAACAGAAAAAAGAAGAAAAAACAATAATTTCAAACGCCTTAATTATCTATGTTTCTCAACTTTCATAAACCCTTTCACTCCTCCTTCAACATCTCTTCTTCAAAACCAACAACAAATTGATCACAACCGTCCATCTCTCTCCACCGCTTCCGCCACGTCATCATCATTAATAATAAAAAACTTCAACACACTCTACCACCACCAAAACCAAACCACCGAAACTGATTCCGAACCCGAACCCGCAGATTTCGCAACCGCCTTCGCCTCTAACCGTTTCTTTTTCTCTTCTCCCGGTCGATCCAACTCCATCGTTGAATCCTCTTCATCTTCCTCTTCATCCTCGTCATTAACAGCCACGGTACCGGCGCCGGTGAATGATTCCGAAAACTACAAAAGTAAAGCAATTTTCGACGGAAGTGTGGCGGTGCCAACTTACTCGCCGGATCCTTACGTCGATTTCCGACGGTCAATGCAAGAAATGGTGGAAGCACGACCGGAGTTGATGAACGATGTGAAGTCCAATTGGGATACATTACACGAGCTTCTTCTTAGTTATCTTTCTCTTAATCCAAAAAGTACACACAAATTCATTCTCGGTGCTTTTTCTGATCTTATCGTTACTCTTATGTCATTATCTTCTTCTTCATCTTCTTCTTCTTGTTCTTATCCACCACCGCCGCAGAATTCTAACGGTGGTGGCTGTGGCGGTGGATGTTAA 735 0.4313 MPTTMTTEKRRKNNNFKRLNYLCFSTFINPFTPPSTSLLQNQQQIDHNRPSLSTASATSSSLIIKNFNTLYHHQNQTTETDSEPEPADFATAFASNRFFFSSPGRSNSIVESSSSSSSSSSLTATVPAPVNDSENYKSKAIFDGSVAVPTYSPDPYVDFRRSMQEMVEARPELMNDVKSNWDTLHELLLSYLSLNPKSTHKFILGAFSDLIVTLMSLSSSSSSSSCSYPPPPQNSNGGGCGGGC* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3543 244 Pfam Transcriptional repressor, ovate 152 214 IPR006458 -
Tpr6g3543 244 ProSiteProfiles OVATE domain profile. 148 213 IPR006458 -
Tpr6g3543 244 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 17 224 IPR038933 GO:0045892
Tpr6g3543 244 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 146 215 IPR006458 -
Tpr6g3543 244 MobiDBLite consensus disorder prediction 223 244 - -
Tpr6g3543 244 PANTHER TRANSCRIPTION REPRESSOR OFP12 17 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3543 Tpr-Chr6 38393807 38394819 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Tpr6g3543 Ovate 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3543 - - lja:Lj0g3v0324199.1 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3543 6 38393807 38394819 Tpr1g2020 1 20717022 20717994 PCT