Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3533 ATGGCTTTCGATGGAAATAACAATGCAACAAAACTCAATACTCGGAAGAGGAAATTTGGTGAAATCATGAAAGGGGAAAAATCAAACAAGTCTCAAATGACGTTCTCAAATTGTACACTCGGACTTTTCAACAAAGCAACGAAGCTCTCTGTTCTATGCAACGCAAAAACTGCACTCATTGTCGCATCACCAAACAACGAACTCTATATATGTGGCTATCCTAATTGTGACGCCGTCATTCAACAATTATTGACCGGAAAAGACACCATTGAAGAAACTGAGAAAAAGAAGCAAGAGAAGATTGTTGAAACCCTAAGGATTGAATATGAGACAATTGGAGATAAACTTAAGAAACTTATGGAAGAAGAAAAGAATTTGCAAACTATCAACGATGAGGCGGAGAAGAGTGGTTCTATTTCCTCTTGTTGGTGGAATGACCCTATTGATGATATGGATTTACAATCTCTCGAGGAATTCAAGATTTCTTTGGAAAAGTTGAGACTTAATTTAGGTTCAGCCCTTGACGAAAAGAAGTTAATGTCCACACTTCGATCTTAA 558 0.3728 MAFDGNNNATKLNTRKRKFGEIMKGEKSNKSQMTFSNCTLGLFNKATKLSVLCNAKTALIVASPNNELYICGYPNCDAVIQQLLTGKDTIEETEKKKQEKIVETLRIEYETIGDKLKKLMEEEKNLQTINDEAEKSGSISSCWWNDPIDDMDLQSLEEFKISLEKLRLNLGSALDEKKLMSTLRS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3533 185 Coils Coil 102 136 - -
Tpr6g3533 185 SMART madsneu2 14 74 IPR002100 GO:0003677|GO:0046983
Tpr6g3533 185 Coils Coil 156 176 - -
Tpr6g3533 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 69 IPR002100 GO:0003677|GO:0046983
Tpr6g3533 185 Gene3D - 28 111 IPR036879 GO:0003677|GO:0046983
Tpr6g3533 185 PANTHER MADS BOX PROTEIN 11 181 - -
Tpr6g3533 185 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Tpr6g3533 185 SUPERFAMILY SRF-like 21 84 IPR036879 GO:0003677|GO:0046983
Tpr6g3533 185 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Tpr6g3533 185 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Tpr6g3533 185 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Tpr6g3533 185 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 11 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3533 Tpr-Chr6 38301130 38301687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3533 21 167 Type I MADS-box Gene Family AT5G60440 30.719 2.19e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr6g3533 SRF-TF 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3533 - - cam:101507050 171.785