Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3529 ATGGCTCCTAGGATTGATTACTTGTCCGAGGTGGTTCCCGGAAGAACAGCTTGGAGGTTTACGGTTAGGGTTGCCAGAATTTGGGAGGTTTCCACTTATCTCAAAAATAACCAGGTTAACTCCGTTGAAATGGTGCTTGTTGATTCAAAGGGTACCAAGATCCATGCCACTGTAAGAAAACAATTGCTCTATTTGTTCCAGCGGAAGTTGGACGAGGGGTTGGTTTATACCATGTCCTTCTTTACCGTTGCTTGCAGCGCTGGTGCGTATCGGACTACTTTGCATCCTTACAAACTTGTGTTTCAGATGAAAACTAGGGTTGAGTTGTCCGAGTGTCCTGAAATATCTCGCTTTGGTCTCTCTTTGAGTACCATTGCTGAAATCCGTGCTCTTCCTGCTGAATATGATCATTTGGTTGATGTTGTTGGACTTCTTACTGGAGTATCTCGTGAACGCGAGTATTTAAGGGATAGCAGAGTTACCAAGATGATTGTTATTGAACTTACTGATCACACTGGAAAGTGTGAGTGTGCCTTGTTTGGTGATTATGTTGGCCAGTTTCTCGAGATGGTTGGGAAGAAAACTGATTACATGCCTGTTGTTATTGTTCAGTTTGCCAAAGTTAAACTCTTCAGAGACGAGGTGTCTATTCAGAATGTTATTAATACCACTAGGTTGTTGGTTGACCCTCCCATTGCTGAGGCTGTTGGTTTTAAGGATAGGCTTGCTTCTCATGGCATCAATGCTGCTACTTCCATTGTTGTTCTTGGTCCTCGTGTTAGGCCTTCTATGGAGGAGGATTTCCTTCATAGTTATCCTATTATAACTATTTCTGGGTTGAATTCATTAACTTCTGATGGGGTTTTTGTCGTTTCTGCCACTATAATTGGTGTGGTTGCTGATGAGGATTGGTGGTATCCTGCTTGCAAGTGTCACAAGAGTGTGTCCCCTGACTCTAGTGCCTACTATTGTGGTCGTTGTGTTAAGCATGTCTTCCAGATGATACCTCGTTTTAGGGTTAAGCTCCGTGTTACTGATGGTGGTGGAGATGGCGTTTTTGTTGTGTTTGATGGTGATATGCAGTATCTTCTTGGGGATCAGTGTGCTACTTTGGTCGCCCGTGCAGCTGTAATTTTTACTCCTTTGTTTTTGTTGTGTCTTTGTTTTGATAGAGCACACAAGTGA 1185 0.4312 MAPRIDYLSEVVPGRTAWRFTVRVARIWEVSTYLKNNQVNSVEMVLVDSKGTKIHATVRKQLLYLFQRKLDEGLVYTMSFFTVACSAGAYRTTLHPYKLVFQMKTRVELSECPEISRFGLSLSTIAEIRALPAEYDHLVDVVGLLTGVSREREYLRDSRVTKMIVIELTDHTGKCECALFGDYVGQFLEMVGKKTDYMPVVIVQFAKVKLFRDEVSIQNVINTTRLLVDPPIAEAVGFKDRLASHGINAATSIVVLGPRVRPSMEEDFLHSYPIITISGLNSLTSDGVFVVSATIIGVVADEDWWYPACKCHKSVSPDSSAYYCGRCVKHVFQMIPRFRVKLRVTDGGGDGVFVVFDGDMQYLLGDQCATLVARAAVIFTPLFLLCLCFDRAHK* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3529 394 Gene3D - 4 109 IPR012340 -
Tpr6g3529 394 CDD RPA1_DBD_C 274 372 IPR013955 -
Tpr6g3529 394 CDD RPA1_DBD_A_like 22 107 - -
Tpr6g3529 394 Pfam Domain of unknown function DUF223 43 114 IPR003871 -
Tpr6g3529 394 PANTHER REPLICATION FACTOR A 1, RFA1 22 366 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr6g3529 394 Pfam Replication factor-A C terminal domain 290 371 IPR013955 -
Tpr6g3529 394 SUPERFAMILY Nucleic acid-binding proteins 121 248 IPR012340 -
Tpr6g3529 394 SUPERFAMILY Nucleic acid-binding proteins 284 373 IPR012340 -
Tpr6g3529 394 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Tpr6g3529 394 CDD RPA1_DBD_B_like 140 242 - -
Tpr6g3529 394 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 366 - -
Tpr6g3529 394 Gene3D - 114 253 IPR012340 -
Tpr6g3529 394 Gene3D - 270 377 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3529 Tpr-Chr6 38269281 38272116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3529 1 365 Core DNA Replication Machinery Family AT5G08020 25.907 6.69e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3529 - - mtr:MTR_8g062030 424.476