Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3524 ATGGAGCAGTATGAAATTCTAGAACAGGTCGGTAAAGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAAGAAAAAGTATGTCCTCAAGAAGATCCGTCTTGCTCGCCAAACTGACAGAACCCGTAGGTCGGCCCATCAGGAGATGGAGCTTATATCTAAAGTTCGCAACCCATTTATTGTGGAGTACAAAGATTCTTGGGTAGAAAAGGGTTGTTTTGTATGTATTATCATCGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCCAATAGTGTTAACTTTTCTGAAGAGAAACTCTGCAAGTGGCTTGTCCAGTTGCTGATGGCACTTGATTACTTACATGTAAATCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAAATCAAGATATACGTCTAGGTGACTTTGGTCTCGCTAAAATGTTGACATCTGATGATCTTGCTTCATCAATTGTTGGGACTCCAAGTTATATGTGCCCTGAGCTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGCTGTGTTTATGAAATGGCTGCTCACAGACCAGCTTTTAAAGCTTTTGACATACAAGCATTGATTCACAAAATAAACAAGTCTATAGTATCTCCACTGCCAACTATGTACTCTAGTGCTTTCCGAGGGCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTAAGGCCAACTGCCAGAGAGTTACTAAATCATCCACATCTTCAGCCTTACATTCTTAAAGTTCACCAAAAACTAAATAGCCCCAGAAGTACTTTTCCATTCCAATGGCCCGAGTCAAACTATGCAAGAAGAACTCGGTTTGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGACAGGTACTTGTCACTAAACAATCACAGGGCATTGAATCCCAGTATTTCTGGAACGGAACAAAGTTCTCAATATTCTTCTATTCAAAGAGCTCAAGGATTATCCAATTGTTCAGTAGAGAAGCTCTATGACTTATCTGCTGGTGTTGTCCGTGATCACTGCAATACTAACAAATCAAAAGCCATAAAGTCCTCAACTGGGGAAAGAACACCACGACTTAGAGTAGCTAAGGAATCCGCTTCTGCCAGAAGGCAGACAACAGCACAGCCAAAGATATATGTTACCGGTTCAAAGCGTGAATCACTTCCGGTTCCCCGTGCACCATCTGGTAAGTCTTCCACGCCAACTTGGAGAGCATCCCTTCCGATTCCTACAAGAGGCAGGAACACAACAAACTTCTACACTGATGTTGGTTATGTGGATTCTCCTGATGTTTCTGTTGATGCACCGCAAATTGACAGGATTGCAGAATTCGCAATGGCTTCCTACGAGGATCCATTCTTTCATGTTATTCGCAGATCATCATCAGCATCAGCCAAATGTTTTTCTAGCACAGCAGGGAGTGCTGATTGCACAATCACAAAGGACAAGTGTACAATCCTGGTGGACAAAAAAGTTACTGTCCCTACTAGCACCGCTGAAGCTGGTACTGGTGTTCCATTTACAAATGGCAGTGCCAGTGAATGCTCTAACTATGTTACAGCTGGCGTTTCAAGCCGCTCCTCATCTGAGTCGCGCGAGCATCGGTTTGACACCTCGTCATACCAGCAACGTGCTGATGCGTTGGAGGGGCTGCTGGAGTTCAGTGCTAGACTACTACAACAACATAGGTTTGATGAGCTTGGTGTATTGCTGAAGCCGTTTGGGCCTGAGAAGGTTTCTCCAAGGGAAACGGCTATTTGGTTGGCCAAGAGCTTTAAACAAAACTGTGATCTAAGGTTTCCTCATACACTTACGTGA 1869 0.4329 MEQYEILEQVGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANSVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKNQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHRPAFKAFDIQALIHKINKSIVSPLPTMYSSAFRGLVKSMLRKNPELRPTARELLNHPHLQPYILKVHQKLNSPRSTFPFQWPESNYARRTRFVEPESVSTLSDQDRYLSLNNHRALNPSISGTEQSSQYSSIQRAQGLSNCSVEKLYDLSAGVVRDHCNTNKSKAIKSSTGERTPRLRVAKESASARRQTTAQPKIYVTGSKRESLPVPRAPSGKSSTPTWRASLPIPTRGRNTTNFYTDVGYVDSPDVSVDAPQIDRIAEFAMASYEDPFFHVIRRSSSASAKCFSSTAGSADCTITKDKCTILVDKKVTVPTSTAEAGTGVPFTNGSASECSNYVTAGVSSRSSSESREHRFDTSSYQQRADALEGLLEFSARLLQQHRFDELGVLLKPFGPEKVSPRETAIWLAKSFKQNCDLRFPHTLT* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3524 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tpr6g3524 622 MobiDBLite consensus disorder prediction 363 419 - -
Tpr6g3524 622 Gene3D Transferase(Phosphotransferase) domain 1 86 319 - -
Tpr6g3524 622 CDD STKc_Nek 3 258 - -
Tpr6g3524 622 MobiDBLite consensus disorder prediction 368 382 - -
Tpr6g3524 622 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3524 622 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3524 622 MobiDBLite consensus disorder prediction 383 397 - -
Tpr6g3524 622 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Tpr6g3524 622 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 603 - -
Tpr6g3524 622 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Tpr6g3524 622 PANTHER SERINE/THREONINE-KINASE NEK4 1 603 - -
Tpr6g3524 622 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g3524 622 SUPERFAMILY Protein kinase-like (PK-like) 1 330 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3524 Tpr-Chr6 38205232 38213016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3524 10 259 MAP Kinase Kinase Kinase AT1G53570 32.157 1.40e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tpr6g3524 Pkinase 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3524 K08857 - gmx:100810347 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3524 6 38205232 38213016 Tpr6g3524 6 38205232 38213016 ECH
Tpr6g3524 6 38205232 38213016 Tpr1g2038 1 20971485 20975973 PCT