Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3517 ATGAACTATTTGTACCCGGTGAAAGAAGAGTATTTGGAAATTGAAGCAACATCATCGTCGGCGTCGACGACATATGAAAGAGGAAGTGATGAGGGATCAATGGTTGTTATTCCACGGCCAATGGAGGGACTACATGAAGTAGGACCACCACCATTTCTAACCAAGACTTATGATGTTGTGGAGGACCCCACAACAAGTCACATAGTTTCATGGAACAGAGATGGTGCTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCAAGAGATCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACTTATATAAAGTTCCTGGTCCAAGATTCAATGGATTTGAGAATAGATGAGGGCCAAGAGTAG 387 0.4109 MNYLYPVKEEYLEIEATSSSASTTYERGSDEGSMVVIPRPMEGLHEVGPPPFLTKTYDVVEDPTTSHIVSWNRDGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYIKFLVQDSMDLRIDEGQE* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3517 128 SUPERFAMILY "Winged helix" DNA-binding domain 50 110 IPR036390 -
Tpr6g3517 128 SMART hsfneu3 48 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g3517 128 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g3517 128 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g3517 128 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g3517 128 Gene3D - 45 125 IPR036388 -
Tpr6g3517 128 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 110 IPR027725 -
Tpr6g3517 128 Pfam HSF-type DNA-binding 52 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g3517 128 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 20 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3517 Tpr-Chr6 38134644 38136952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3517 38 110 HSF AT3G22830 75.342 8.05e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr6g3517 HSF_DNA-bind 3e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3517 K09419 - gmx:100794264 188.734