Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3506 ATGTCTAATAATCATAATCTACAATATGATGGTAGTTCATTTATCATTGACATCACAAGTACCCTTAACAAAGTCACTTCTAAATACACAAACAATGCAAAAAGAAGATGGCGTTTTGCATATACAGCTATTTATTCTAGAAGGGTTATGCTTTCTCTTGCAAAAGAAGTCATATCTAGAAAAAATCCAAATCACTATGCAAAACTCTTTCACACAGAATCTTGTTCTAGTTCCAATACCACTCTTGATATAATTGAACCACTAATTACAATACATAATGGAACCAAAACCAATTTGGTTTCTGATTTTGTTGATAAAACCAAACTTGCTGATATGGTTAAGGACAAAAACTTGAAGTCCTTAAGTGAGTTTGGTGGAGTTGAAGGTGTTGTACATGTTCTTGGAACAGTTCATGACAAAGGAATCATTGGAAGTGACGACGATATTTTGAGGCGGATTGAGTTGTTTGGTTCAAATACTTACAAAAAGCCACCACCAAAAGGTCTTTTACATTTTGTGCTTGAAGCTTTCAATGATACAACTATTATCATTCTTCTTGTTTGTGCTGGTCTTTCCCTTGGTTTTGGCATAAAAGAACATGGAGCAGGGGAAGGTTGGTATGAAGGTGGAAGTATATTTCTTGCAGTTTTTCTTGTTGTGGTTGTAAGTGCATTGAGCAATTTCAGACAAGAAAGACAATTTCACAAATTGTCTAAGATAAGTAACAATATCAAAGTTGAAGTTGTTAGAAATGGAAGGCCACAAAAGATATCAATCTTTGATGTTCTTGTGGGAGATGTTGTTTCTCTCAAAATTGGTGATCAAATTCCAGCTGATGGAGTTTTTTTGTCAGGTCATTCATTGCAAGTGGATGAATCTAGCATGACAGGTGAGAGCGATCATGTAGAGATTGAGCCTTTAAGAGCTCCATTTTTGTTATCCGGTGCAAAAGTTGTGGATGGATATGCTCAAATGCTTGTGACATCTGTGGGAAAAAACACATCATGGGGTCAAATGATGAGCTCGATAACGCGAGACACTAACGAAAGAACCCCGTTACAAGCGCGCCTTGACAAGTTAACCTCTTCGATCGGAAAGGTTGGACTTGCAGTAGCGTTTCTTGTTCTTTTAGTGTTGTTGATTCGTTATTTTACCGGTAACTCGCAGGAGGATAAAGGGCATAAGAAGTTTCGAGGAAGCAAAACAGATATAAATGATGTTTTAAATTCTGTTGTGAGTATTGTTGCGGCTGCAGTCACTATTGTGGTTGTAGCAATCCCTGAGGGTTTGCCATTGGCTGTGACACTCACACTTGCTTACTCCATGAAAAGAATGATGGGAGATAATGCTATGGTGAGGAAACTTTCTGCCTGTGAAACTATGGGATCAGCAACAGTTATCTGCACTGATAAAACTGGTACCTTGACATTAAATCAAATGAGGGTCACCAAGTTTTGTCTTGGCATTGAAAACTTTACCGAAATATTTTCCAATGCAATGGCTCCAAAAGTTCTTGAATTGTTCCATCAAGGAGTAGGCCTTAATACAACTGGTAGTGTCTATAATCCTCCATCAGGTTCCGAACCTGAAATTTCGGGTAGTCCAACAGAGAAAGCTATACTCTTGTGGGCTGTATCGGAATTAGGTATGAACATGGATGAAATGAAACAGAAACATAAAGTCCTTCATGTTGAAACATTTAACTCAGAGAAGAAACGAAGCGGCGTTGCAATAAAGAAGGAGAACGACGACAGAGTTCATGTGCATTGGAAAGGAGCTGCAGAGATGATACTAGCAATGTGTACAAGCTATACTGATAGTAACGGAGCGAGGAAATCCCTTGTTGATGAAGAGCGGAGAAAAGTTGAGACGACAATCCAAGGTATGGCTGCTAGTAGTCTAAGATGTATTGCTTTTGCTCACATGGAGATTTCAGATTCAGAAGGTAATGATTATATGATCACAAGGGAGAAAAAAACACATCAAATCCTAAGAGAAGATGGATTGACCTTGCTTGGCATTGTTGGTCTCAAGGATCCATGCAGACCAAACACAAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATCACCGGCGATAACATATTCACCGCAAAGGCAATAGCAACAGAATGTGGAATATTAGATCCTAAGAATGCCAATGCCGGAGAAGTTGTGGAAGGTGTGGAATTCAGAAATTATACAGAAGAAGAGAGAATGGAGAAAGTCGATAAGATCCTAGTAATGGCAAGATCATCCCCTATGGACAAACTTTTGATGGTGCAATGCTTAAGAAAGAAAGGCCATGTAGTTGCAGTCACAGGCGATGGCACGAACGATGCACCTGCATTAAAAGAAGCTGATATAGGACTTTCTATGGGAATCCAAGGAACCGAAGTTGCAAAAGAAAGTTCTGATATTGTTATCTTAGACGACAACTTCAATTCGGTTGCAACTGTTTTAAGATGGGGAAGATGTGTTTACAACAACATCCAGAAATTTATTCAGTTTCAACTAACAGTGAATGTTGCAGCACTTGTGATAAACTTTATTGCAGCAGTTTCGTCCGGCGATGTTCCTTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGATACATTAGGTGCTTTGGCATTAGCAACAGAAAGACCTACAAAAGAGTTAATGAAGAAAAAGCCGATCGGTAGAACCGAACCTCTTATCACAAACATTATGTGGAGAAACCTTTTAGCTCAAGCTTCATATCAAATTGCAGTTCTTCTGATTATGCAGTTTTATGGAAAATCAATCTTCAATGTAAGTAAGGAGGTAAAAAATACACTAATCTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAACTCAAGGAGTATGGAGAAACTCTATGTATTCGAAGGCATTCTGAAAAACCATCTGTTTATTGGAATTATTGGTATTACTATTGTTCTTCAAATCTTGATGGTGGAACTGCTAAGGAAATTTGCTGATACAGAAAGATTAACATGGGAGCAATGGGGAATTTGTGTTGGCATTGCAGTTGTTTCATGGCCACTTGCTTGCTTAGTAAAGCTCATACCTGTTTCAGATAAACCTTCATTCAACTATACTAAGTGGATTAAATTATTAGTTGTTAAGATTAAGAAGGCTTTTTAA 3180 0.3802 MSNNHNLQYDGSSFIIDITSTLNKVTSKYTNNAKRRWRFAYTAIYSRRVMLSLAKEVISRKNPNHYAKLFHTESCSSSNTTLDIIEPLITIHNGTKTNLVSDFVDKTKLADMVKDKNLKSLSEFGGVEGVVHVLGTVHDKGIIGSDDDILRRIELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGAGEGWYEGGSIFLAVFLVVVVSALSNFRQERQFHKLSKISNNIKVEVVRNGRPQKISIFDVLVGDVVSLKIGDQIPADGVFLSGHSLQVDESSMTGESDHVEIEPLRAPFLLSGAKVVDGYAQMLVTSVGKNTSWGQMMSSITRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSQEDKGHKKFRGSKTDINDVLNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMGDNAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFCLGIENFTEIFSNAMAPKVLELFHQGVGLNTTGSVYNPPSGSEPEISGSPTEKAILLWAVSELGMNMDEMKQKHKVLHVETFNSEKKRSGVAIKKENDDRVHVHWKGAAEMILAMCTSYTDSNGARKSLVDEERRKVETTIQGMAASSLRCIAFAHMEISDSEGNDYMITREKKTHQILREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIATECGILDPKNANAGEVVEGVEFRNYTEEERMEKVDKILVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMKKKPIGRTEPLITNIMWRNLLAQASYQIAVLLIMQFYGKSIFNVSKEVKNTLIFNTFVLCQVFNEFNSRSMEKLYVFEGILKNHLFIGIIGITIVLQILMVELLRKFADTERLTWEQWGICVGIAVVSWPLACLVKLIPVSDKPSFNYTKWIKLLVVKIKKAF* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3506 1059 PRINTS Sodium/potassium-transporting ATPase signature 212 232 - -
Tpr6g3506 1059 PRINTS Sodium/potassium-transporting ATPase signature 461 482 - -
Tpr6g3506 1059 PRINTS Sodium/potassium-transporting ATPase signature 588 606 - -
Tpr6g3506 1059 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 753 859 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr6g3506 1059 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 212 385 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr6g3506 1059 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 410 491 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr6g3506 1059 CDD P-type_ATPase_Ca_PMCA-like 149 912 - -
Tpr6g3506 1059 Pfam E1-E2 ATPase 244 446 - -
Tpr6g3506 1059 SUPERFAMILY Calcium ATPase, transduction domain A 243 342 IPR008250 -
Tpr6g3506 1059 SUPERFAMILY HAD-like 466 884 IPR036412 -
Tpr6g3506 1059 Gene3D - 175 1033 - -
Tpr6g3506 1059 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 474 684 IPR023299 GO:0000166
Tpr6g3506 1059 Gene3D - 478 680 IPR023299 GO:0000166
Tpr6g3506 1059 SFLD Haloacid Dehalogenase 450 832 - -
Tpr6g3506 1059 Pfam haloacid dehalogenase-like hydrolase 466 793 - -
Tpr6g3506 1059 PRINTS P-type cation-transporting ATPase superfamily signature 291 305 - -
Tpr6g3506 1059 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Tpr6g3506 1059 PRINTS P-type cation-transporting ATPase superfamily signature 673 684 - -
Tpr6g3506 1059 PRINTS P-type cation-transporting ATPase superfamily signature 695 705 - -
Tpr6g3506 1059 PRINTS P-type cation-transporting ATPase superfamily signature 779 798 - -
Tpr6g3506 1059 PRINTS P-type cation-transporting ATPase superfamily signature 803 815 - -
Tpr6g3506 1059 PANTHER CATION TRANSPORTING ATPASE 23 1023 - -
Tpr6g3506 1059 Pfam Cation transporter/ATPase, N-terminus 126 192 IPR004014 -
Tpr6g3506 1059 PANTHER CALCIUM-TRANSPORTING ATPASE 23 1023 - -
Tpr6g3506 1059 SUPERFAMILY Calcium ATPase, transmembrane domain M 124 1037 IPR023298 -
Tpr6g3506 1059 ProSitePatterns E1-E2 ATPases phosphorylation site. 470 476 IPR018303 -
Tpr6g3506 1059 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 100 1036 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Tpr6g3506 1059 Gene3D - 146 344 - -
Tpr6g3506 1059 Pfam Cation transporting ATPase, C-terminus 864 1034 IPR006068 -
Tpr6g3506 1059 Gene3D - 465 824 IPR023214 -
Tpr6g3506 1059 SMART Cation_ATPase_N_a_2 123 197 IPR004014 -
Tpr6g3506 1059 SFLD p-type atpase 450 832 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3506 Tpr-Chr6 37954834 37960136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3506 33 1046 Primary Pumps ATPases AT3G63380 68.824 0.0 1338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3506 K01537 - gmx:100790034 1594.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3506 6 37954834 37960136 Tpr1g2499 1 28265602 28274765 PCT