Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3493 ATGGGAAGCTATATTGAAACAGAGTTGATTATTAATCACAAGGACACAGAATTAAGGTTAGGATTACCTGGAAGTGAAGATGATCAACAATCATGCAATGGTTCTATTGTTAGAAGCAACAAAAGAACTTTTTCATCAGAAACAACAAGCGTCCAACAAGAATCCATTTGTAAGAGCAACAATGTTAGCTCAGATACTTCTAATTCTTCAACCACAAGTAATGATCATGATCATGACCAAGACACCGTCCAACCTAAAAAGGTACAAGTAGTAGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTTTACAACAAAAGAAAGTTGAAGATGGATGTGGAATGTATGTGAAAGTGAGTATGGCTGGTGCACCTTATTTGAGGAAGATAGATCTCAAAATTTTCAAAAGCTATTCAGAACTTCTTATAGCTTTGGAAAATTTGTTTAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGGTATAATGGATCTGAATGTGCTCCTACTTATGAAGATAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGAACATGTTCATATCTTCTTGCAAGAGGCTAAAGATAGTGAAAGGATCAGAAGCAAAGGGGTTGGCATGTTTATGA 633 0.3649 MGSYIETELIINHKDTELRLGLPGSEDDQQSCNGSIVRSNKRTFSSETTSVQQESICKSNNVSSDTSNSSTTSNDHDHDQDTVQPKKVQVVGWPPIRSFRKNSLQQKKVEDGCGMYVKVSMAGAPYLRKIDLKIFKSYSELLIALENLFKCTFGEYSEREGYNGSECAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLACL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3493 210 MobiDBLite consensus disorder prediction 40 87 - -
Tpr6g3493 210 MobiDBLite consensus disorder prediction 40 71 - -
Tpr6g3493 210 ProSiteProfiles PB1 domain profile. 114 206 IPR000270 GO:0005515
Tpr6g3493 210 Pfam AUX/IAA family 16 208 IPR033389 -
Tpr6g3493 210 Gene3D - 109 210 - -
Tpr6g3493 210 PANTHER AUXIN-INDUCED PROTEIN 10 208 - -
Tpr6g3493 210 SUPERFAMILY CAD & PB1 domains 109 198 - -
Tpr6g3493 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 208 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3493 Tpr-Chr6 37777767 37779256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3493 102 207 B3 DNA Binding Superfamily AT2G46530 35.849 3.62e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr6g3493 AUX_IAA 2.2e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3493 K14484 - gmx:100792134 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3493 6 37777767 37779256 Tpr6g3493 6 37777767 37779256 ECH
Tpr6g3493 6 37777767 37779256 Tpr1g2073 1 21551968 21553840 PCT