Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3492 ATGGAAGTTGTTGTTGGCATGAAGAAGGAGAAAATGGAGTTTGATGAAACTGAGCTAAGACTTGGAATTGGATCAACCAAAGCTAGTGAAGAAGTTGTAAGGAAGAGAGGATTTTCTGAGACTGAAAATCATGATGATGATGATGATGAGAACACTACTATGGATTTGATGCTTAATCTTTCTTCTAAGGAAGCTAGTGGTGAGGTAGATCCAAATGATAAGATCAAGAATTTGCAAAAGGAGAAGACTCTTTTGCCTGATCCTGCCAAGCCTCCTACAAAGACTCAAGTGGTGGGTTGGCCACCTGTCCGGTCATACCGTAAGAACATGTTAGCAATGCAAAAAAGTAGTACTAATTTTGGAGATGAAAGTGAAAAGAACAATGCAATTAGCTTTGTGAAAGTTAGCTTGGATGGAGCACCTTATCTCCGCAAAGTCGACTTACAGATGTACAAAAGTTACTCACAACTTTCTGATTCCTTAGGCAAAATGTTCAGCTCCTTCACCATTGGCAACTGTGAATCACAAGGAATGAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTTTTAAACAATTCTGATTATGTCCCAACCTATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGACGTCCCATGGGAGATGTTTGTTGAATCATGCAAACGTTTGCGTATCATGAAAGGAAAGGAGGCTATTGGTATTGCACCAAGAGCCATGGAGAAGTGCAAGAACAGACGCTAG 747 0.4029 MEVVVGMKKEKMEFDETELRLGIGSTKASEEVVRKRGFSETENHDDDDDENTTMDLMLNLSSKEASGEVDPNDKIKNLQKEKTLLPDPAKPPTKTQVVGWPPVRSYRKNMLAMQKSSTNFGDESEKNNAISFVKVSLDGAPYLRKVDLQMYKSYSQLSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGIAPRAMEKCKNRR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3492 248 Pfam AUX/IAA family 16 239 IPR033389 -
Tpr6g3492 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 241 IPR003311 GO:0005634|GO:0006355
Tpr6g3492 248 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 241 - -
Tpr6g3492 248 SUPERFAMILY CAD & PB1 domains 131 229 - -
Tpr6g3492 248 MobiDBLite consensus disorder prediction 30 52 - -
Tpr6g3492 248 Gene3D - 124 241 - -
Tpr6g3492 248 ProSiteProfiles PB1 domain profile. 130 230 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3492 Tpr-Chr6 37758196 37762117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3492 116 233 B3 DNA Binding Superfamily AT3G61830 29.661 1.79e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr6g3492 AUX_IAA 5.6e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3492 K14484 - gmx:100810013 365.155