Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3486 ATGTCGAATGAAGTTGCAAAAACCAAAAGAGAAGAGATTGCAGCATGCATGACTTGCCCACTTTGTAACAAATTCTACAAACAAGCTACAACTATATCTGAATGTCTTCACACGTTTTGTAGGAAGTGCATTTATGACAAAATTACTGATGAAGATTTGGAATGCTGTCCAGTGTGCAACACTGATTTGGGCTGTGTTCCACTTGAGAAACTAAGGCCGGACCACAATATGCTAAACATAAGGTACATAGTTTTCCCTTCAAAGCGGAAGCGAAGAGAGGTGAAAGAACCTGAAGTTGTCGCTGCCTCAGTAGAGCCGGTACCATTGCCAGCTAAAAGAAAAGAGAGATCTCTTTCATCCTTGGTGGTCAACACACCAAGAGTATCTGCACAATCAACCATGACAGGAAGAAGAACGAAACCTACAAGAAAAGCTAGCAGTATGCGGTCCTCTAGTTTTTCCATTGAAAAGTCAATTAAACAAGAGGAAGAATTATTGGACAACCGTCCCGAGAGTTCAAGCTCGCCTGAAACTTCAAATAAGTTGCGTCAAAATAATGGACAGAGTGAGGGCAGTCAATCCCCACCAAATAAAGAAGCAGAGAACGGTGCCGAATCATGGGATGCAAAGATGGATCTTTGGAAGCCTTTGAATGATTTAGTAGAGATCGCAAGCAGGACTAAATCTTTCAAGTCTAATACCCAACGGTCCGATGCCAAACCAGAACATGTTCAAGTAAATGAGAGTGACTCTGTAGTGCAGAAAATCAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAGAGTAGCCCTTTTCCAGTTTGTTCGGATACAGCAAAACCAAATAAATTGCGCAGAGTACGCAGGAAAAAGGAACCATTTGGAGAATCAGGCATATCTCCCCAAGCTGTGGTGGATTCTACCAGCAATAAACACTTTAAGAGTAGTCCAATTTGGTTATCCTTAGTAGCTACTGAAAATCAGGAAGGAGAAGCACCCTTGCCGAATATTCCTGCAATCTATTTGAGAATAAAGAATGGAAGCGCGCCTGTCTCATGTATCCAAAAATACCTATTGCAGAAACTCAATCTGACCAGTGAAACCGAGATTGAGATTAAGTGTATGGGTCATCCAGTGCTCCCTACACTTAACCTACATGATTTGGTTGAGTTGTGGCTGGATTCAGCAGCATCTGCATCAGACCGAATTCCAGCAATTATCGGGTCCTCGGCAAAGGATTTTGTCATGGTCCTCGCTTATTCTCGGAAGACTCCACACCCTTGA 1293 0.4223 MSNEVAKTKREEIAACMTCPLCNKFYKQATTISECLHTFCRKCIYDKITDEDLECCPVCNTDLGCVPLEKLRPDHNMLNIRYIVFPSKRKRREVKEPEVVAASVEPVPLPAKRKERSLSSLVVNTPRVSAQSTMTGRRTKPTRKASSMRSSSFSIEKSIKQEEELLDNRPESSSSPETSNKLRQNNGQSEGSQSPPNKEAENGAESWDAKMDLWKPLNDLVEIASRTKSFKSNTQRSDAKPEHVQVNESDSVVQKIKNKENKRKAKVEDEKSSPFPVCSDTAKPNKLRRVRRKKEPFGESGISPQAVVDSTSNKHFKSSPIWLSLVATENQEGEAPLPNIPAIYLRIKNGSAPVSCIQKYLLQKLNLTSETEIEIKCMGHPVLPTLNLHDLVELWLDSAASASDRIPAIIGSSAKDFVMVLAYSRKTPHP* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3486 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 106 IPR013083 -
Tpr6g3486 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 426 - -
Tpr6g3486 430 Gene3D - 302 399 - -
Tpr6g3486 430 SUPERFAMILY RING/U-box 12 80 - -
Tpr6g3486 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Tpr6g3486 430 MobiDBLite consensus disorder prediction 230 276 - -
Tpr6g3486 430 MobiDBLite consensus disorder prediction 118 155 - -
Tpr6g3486 430 MobiDBLite consensus disorder prediction 113 204 - -
Tpr6g3486 430 MobiDBLite consensus disorder prediction 156 170 - -
Tpr6g3486 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Tpr6g3486 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Tpr6g3486 430 MobiDBLite consensus disorder prediction 253 273 - -
Tpr6g3486 430 MobiDBLite consensus disorder prediction 171 200 - -
Tpr6g3486 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 426 IPR044807 GO:0004842
Tpr6g3486 430 SMART ring_2 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3486 Tpr-Chr6 37651490 37657425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3486 5 348 C3H Transcription Factor Family AT2G30580 48.997 6.58e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3486 K16277 - gmx:100815540 599.356