Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3483 ATGCTTCCTACTGATTCTCCGGCACCGTCCAACCAACATTTCAGAGGAGTTCGTAAGCGTCCATGGGGGCGTTTCGCCGCCGAGATCCGCGATCCATGGAAAAAAACTCGCAAATGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCTAGAGCTTACGATGACGCCGCCAGAGCTCTCCGTGGACCAAAAGCAAAAACCAACTTCTCTTACTTCGTTGCTCCTACTATTCTTCCACTTTCTCAGCCTCACGACGGTGGTAATGGAAGACCGGTTGAGTTTTGGGGTCCGCCGGTTTATTTTACCGCCGGTGCTCCGGTGAGATCGGAGTATAAGGGTTATAAGTTGGAGAATATTGTGGTGAGTAAGGAGGAGGTGGAGGAGAAGAAGCCGTTTTTGTTTGATCTTAACTTGCCGGCGCCGCTTGTTTGA 432 0.5208 MLPTDSPAPSNQHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARALRGPKAKTNFSYFVAPTILPLSQPHDGGNGRPVEFWGPPVYFTAGAPVRSEYKGYKLENIVVSKEEVEEKKPFLFDLNLPAPLV* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3483 143 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 88 - -
Tpr6g3483 143 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Tpr6g3483 143 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Tpr6g3483 143 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Tpr6g3483 143 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Tpr6g3483 143 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 88 - -
Tpr6g3483 143 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Tpr6g3483 143 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Tpr6g3483 143 CDD AP2 12 69 IPR001471 GO:0003700|GO:0006355
Tpr6g3483 143 Gene3D AP2/ERF domain 12 71 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3483 Tpr-Chr6 37608434 37609185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3483 13 69 AP2-EREBP Transcription Factor Family AT1G50640 89.474 4.67e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g3483 AP2 8.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3483 K09286 - gmx:100816599 182.57