Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3481 ATGGCTTCTGAAGAACCCACCGTCACCGTCGAAGAAACCGCCGTCGTTGACGAAACTGCCGCCGTCGACACTTTACCTCCTGTCGTCAATGAGTCTGACGAACCTGCTGCTGATGATGATACCACCACCGCCGCCGCCGCCAAGCCGAAGAAAGCTGCTAAGGAGCCTAAGCCGAGGAAGCCAGCTGCTAAGACCGCTCGCACTCATCCTCCTTACGAAGAGATGGTGAAGGATGCGATTGTTACGTTGAAGGAGAAAAACGGTTCGAGTCAGTATGCGATTGCGAAGTTCATTGAAGAGAAGCATAATCAGCTTCCATCGAACTTCAAGAAGATTTTACTTGTTCAGATCAAGAAGCTTGTTGCTTCTGATAAGCTTGTTAAGGTTAAAGGATCTTACAAATTACCACCTAAGTCATCTGCTGCTAAACCAGCTGTTGCTGCTAAGCCTAAGTCAAAGCCCGCTGCTGCTAAGCCCAAGCCCAAGCCCAAGAAACCAACACCTAGGGCTTCTGCTCCTGTTAGTACTAAGAAAGCTAAGCCAGCTGCTAAGGCTAAGCCAGCTGCTAAAGCTAAGCCAGCTGCTAAGGCTAAGCCGGCTCCCAGACGTGCTGCTATTGTGCATCCTGCACCGGTGACGCTTTTGCCTCCCAAACGTAAGCCTAGGCCTGCTCCCAAGGCGAAGCCGGCAGCTAAGGCAAAACCTGCTCCCGCTAAGGCGAAACCTGCTCCCGCTAAGGTGAAAGCAGCTCCCGCTAAGGCAAAGCCTGCTACGAAGGCCAAGCCCGCTGCCAAGCCGGTGAAGGCTTCTCGGACTTCGACCAGGACATCACCTGGGAGAAGAGCTGCTGCGGCAAAGCCTGCTGTGGTGAAGAAGGTTGCCACACCGGTGAAGAAGGCTGCTCCGGTGAAGAAGGCGGCGGTGAAGGCAAAATCGCCAGCGAAGAAGGCAGCTCCGGCTAAGAGGGGGGGTAGAAAGTGA 981 0.5392 MASEEPTVTVEETAVVDETAAVDTLPPVVNESDEPAADDDTTTAAAAKPKKAAKEPKPRKPAAKTARTHPPYEEMVKDAIVTLKEKNGSSQYAIAKFIEEKHNQLPSNFKKILLVQIKKLVASDKLVKVKGSYKLPPKSSAAKPAVAAKPKSKPAAAKPKPKPKKPTPRASAPVSTKKAKPAAKAKPAAKAKPAAKAKPAPRRAAIVHPAPVTLLPPKRKPRPAPKAKPAAKAKPAPAKAKPAPAKVKAAPAKAKPATKAKPAAKPVKASRTSTRTSPGRRAAAAKPAVVKKVATPVKKAAPVKKAAVKAKSPAKKAAPAKRGGRK* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3481 326 MobiDBLite consensus disorder prediction 128 326 - -
Tpr6g3481 326 MobiDBLite consensus disorder prediction 1 74 - -
Tpr6g3481 326 CDD H15 66 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr6g3481 326 SUPERFAMILY "Winged helix" DNA-binding domain 67 149 IPR036390 -
Tpr6g3481 326 PRINTS Histone H5 signature 55 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr6g3481 326 PRINTS Histone H5 signature 82 99 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr6g3481 326 PRINTS Histone H5 signature 152 166 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr6g3481 326 PRINTS Histone H5 signature 215 234 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr6g3481 326 SMART h15plus2 66 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr6g3481 326 PANTHER HISTONE H1 2 223 - -
Tpr6g3481 326 PANTHER HISTONE H1 218 325 - -
Tpr6g3481 326 MobiDBLite consensus disorder prediction 309 326 - -
Tpr6g3481 326 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 68 137 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr6g3481 326 Gene3D - 64 142 IPR036388 -
Tpr6g3481 326 MobiDBLite consensus disorder prediction 50 74 - -
Tpr6g3481 326 Pfam linker histone H1 and H5 family 69 135 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr6g3481 326 PANTHER HISTONE H1.1 2 223 - -
Tpr6g3481 326 PANTHER HISTONE H1.1 218 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3481 Tpr-Chr6 37590134 37591500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3481 31 162 Single Myb Histone (SMH) Gene Family AT1G49950 28.889 4.46e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3481 K11275 - pop:7479991 121.324