Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3476 ATGGCTAGTGAGAGGTTTTGGAAGAATGAAGAAGACAAGGCTATGTTAGAATCTGTATTGGGTGCTGAAGCTGTTGCCTTTTTTAACTCAGCTGTTTCCAAACATGTTTTTTCCGATGTTATTGTTCCGCCTAGTCTTGATTTAGGTATCCACAAAAGGTTGTGTCACATTGTTAAGGGTTCCAAGTGGAACTACTCGATTTTGTGGCAGGTTGCCGGTTTGAAATCCGGTGGTTATGTGTTGAAATACGGTGAGGGACACTGTCAGGATCCTAAAGGGGGTCCCAGGAGTGAGCAGGAAAGGGAGAGAGATGATGTGAGGAGGAAGGTGTTGGGGAAGATTCATGCTTGCTGGGGTGGATCTAGTTCTATTGAGAATGTTTATAAGAAGTTGGAAAGCGTCTCGGATTTGTATATGCTTTACTTGACCTCTGTTTACTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGCAGTTCTTTTAAGTGTGCGAAACCGAATTGGTCTTCTGATGCTGGTAGTTGTTTAAATCAGTATGAATCGAGGTCTTTTCTGGCTAAATCGGCTGGTTTTCAAACTGTTGTTTTTATACCTCTCAAGGCTGGAGTTATCGAGCTTGGTTCAATGGAGATGGTGCCTGAAGATATGGGTTTTTTGGATATGGTCAGGACAACATTTGGAGAATCTACTTCTGGACAGGCTAAGGCAGCACCGAAGATTTTTGGGCACGAGTTAAGTCTAGGGGATACAAAATCTCAGTCCATAACTATTAGCTTCTCCCCTAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTATGAAGTACAAGCACTTGGGGCCAATCATGCTTATGGTAATTCTTCTAATGTGGGTGTAGGAGATAGTAATGATGCAAAAATGTTCCCTCAGTTAACTCAAATGGCTCCTGGGAATTTTACTTCTCAAGCAAGAGTTTCTTCTTCTATTGATTTGGGTAATGAAGACTCATCCTCGCCTCTCGGAGATGAGCGGAAGCCTAGGAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCGCTGAATCATGTTGAAGCGGAGAGGCAAAGACGGGAGAAACTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAAGCTTCTCTACTTGGTGATGCTATTACTCATATCACTGATCTCCAGAAGAAGATCAAGCTGTTGGAAACTGAAAAAAACATGGTTAATAATAAGAGCCAGCAGTTGTCATTGCAAGATATCGATTTTCAGGCTAGACAGGATGACGCGGTTGTGCGAGTTAGCTGCCCTTTGGATATTCACCCGGTTTCTGGAATAGTTAAAGTGTTCAGAGAGCATCAAATTGCAGCTCAAGAGGCGAATGTTTCAACTGCACAGGATAAGATAATTCACACATTCTCTATCAGAACTCAAGGAGGGGAAGCAGCTGCTGTACAGTTGAAAGAAAAGCTCGAAGCATCTTTAGCGAAAAATTAA 1515 0.4238 MASERFWKNEEDKAMLESVLGAEAVAFFNSAVSKHVFSDVIVPPSLDLGIHKRLCHIVKGSKWNYSILWQVAGLKSGGYVLKYGEGHCQDPKGGPRSEQERERDDVRRKVLGKIHACWGGSSSIENVYKKLESVSDLYMLYLTSVYYVFGFNSQYGPGSSFKCAKPNWSSDAGSCLNQYESRSFLAKSAGFQTVVFIPLKAGVIELGSMEMVPEDMGFLDMVRTTFGESTSGQAKAAPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNVGVGDSNDAKMFPQLTQMAPGNFTSQARVSSSIDLGNEDSSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKNMVNNKSQQLSLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVFREHQIAAQEANVSTAQDKIIHTFSIRTQGGEAAAVQLKEKLEASLAKN* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3476 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 424 IPR036638 GO:0046983
Tpr6g3476 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Tpr6g3476 504 MobiDBLite consensus disorder prediction 331 363 - -
Tpr6g3476 504 Coils Coil 398 425 - -
Tpr6g3476 504 MobiDBLite consensus disorder prediction 317 363 - -
Tpr6g3476 504 Gene3D - 345 418 IPR036638 GO:0046983
Tpr6g3476 504 SMART finulus 358 407 IPR011598 GO:0046983
Tpr6g3476 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Tpr6g3476 504 PANTHER TRANSCRIPTION FACTOR BHLH3 3 503 - -
Tpr6g3476 504 CDD bHLH_AtAIB_like 349 426 - -
Tpr6g3476 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Tpr6g3476 504 PANTHER MYC 3 503 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3476 Tpr-Chr6 37531240 37533949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3476 4 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.233 1.06e-163 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g3476 bHLH-MYC_N 4.3e-37 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3476 - - gmx:100782107 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3476 6 37531240 37533949 Tpr6g3476 6 37531240 37533949 ECH