Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3471 ATGGAACACACCGACGAATCTGTTGACGTTGAGTCCAGAGACCTTCATTCCACTAAAGGTACTGATACGTATGATTTAGAATCGAATGCCGACGAGGATGACAGTTATTCAGGATCCAGTGGGGATGAAAGGTCAGAGACTGAAAGTTCAGAGACTGGCGAAGATGCATCTGATAATATTGGAGCTGCAGTTCATAGTGAGGTAAATTTTGATTCAATTACTTCTGATGAGATTCGAGCCATGGAATTTGCTACTGTTAGTGAAGCTTATGAATTTTATTACCGGTATGGTAAATGTAAGGGTTTTGCTATTAGGAAAGCTTCTAGTAGGATAAAAGAGTTAGATGGTAATAAAGTAACACAAATGAAGCAGTTTGTTTGCAACAGACATGGTTTAAGAGAGAAGAAACATTTAACCAGGTTAGATAGGAAAGTAGAACATAGACGTTTGAGCCGTACAAATTGTGAAGCTAGGTTTCGTGTGCAATACAGAAAACAAAAGGATAGATATGTAGTTACTGCTTTCGTAGAGTGTCATAACCATGAATTAACCCCAGCTAGGTTTGTTCACCTGCACCCTGTTTATCGTAAAATATCTGAAGCAGATAAGGCTCAGATTGATGGTCTTCAAACACGTGGAATTAGAACTTGTCATATAATGGGGTACATGATTGCCCAGAAGGGTGGATATGCTAGTGTTGGATTTACAAAGAAAGATTTGTACAATTATTTTGATAAAAAAATGCGTGAGTGTATTAAAGATGGTGATGTTGTCGCTTCTTTAAATTATCTTAATGTAAAGTCGTCTACTGATCCCATGCTATATGCTGAGTATGCCGTCGACAATAGTAATGGACGAATGAGGTCTCTATTTTGGGCTGATGGCAGTAGCAGATCAGACTACTTTTGTTTTGGTGATGTGCTTGCCTTTGACACGACTTACCGGAAGAATAAATACAACTATCCATTGGTTGTATTTTCAGGGTGTAACCACCATTCTCAGACAGTAATTTTTGGTGCTGCATTGGTAGCAGATGAAACGACGGAGACGTACAAGTGGGTGTTGAATTGTTTTTTAGAGTGCATGGAAGGTAAACAACCAAAAGCAGTGGTAACAGATGGAGATGGGGCAATGAGGGAGGCCATAAAACAGATTTTTCCCGATGCCACCCACAGGTTATGTGCTTGGCATTTGAATAAGAATGCAGTTGAGAATGTGAAAGATAATCCAGAATTTTTGGACGGTTTTCAAAAAGCCATGTACTCAAATTTCACAAAGGATGAATTTGAAGAGTATTGGTCAGAGCTAATTAAAGAAACTGAAGTGGAACAACATCCATGGGTTGTCAAAACTTATGAGAATAGGTCACTATGGGCAACTGGATATCTACGTGATCAGTTTTTTGGACGTATAAGGACTACGTCTCAATGTGAAGCTGTTAATGCAATAATAAAGACTTATGTCAGGACGAAAGGCTGCATTTTTGAATTCATGCATAATTTTGATCAGGTTTTGAGAGATTACAGAAATAATGAATTGGAAGCTGATTTTAAGTCAAAGTTTACGGTACCTGTGTTGACAACTCAACTGCGTGTGATTGAGAGTGATGCCGCCAATACTTATACTGCGGAGATTTTCAAAGAAGTTAAAGAGCAAATTCTGAAGGCTGGTGCATTGATAGTTAAGCATAAAAGTGATCACGGGGATACAAAGATTTATACATTAACAAAATTTTGTAACGATACATATGAAAGGAAAGTTGTATTTGATGGTACCACATTGCAATGTTCGTGTAAGTTGTTTGATTCTCGCGGTGTTCCATGTTCTCATATATTTTATGTCATGAAGGATGAACATGTTGATCATATTCCTAGGCCCTTGGTATTGTCGCGATGGACCAAGGATGCCAAAATTGAGTATTTGAACAACATGGAATGTAATGGTGATGTTGATTCGAACGTAGTTGAGGAAGCTCGTTTTGGTGCATATTGTTCGGCCTTTACAAGTTTTTGCAAAGAAGCTGCAAAAAAGAATGGTGTGTATGGCCAAATTTTGGATGACATTATGAAATTACAAAAAAAGTACTGCATTAATGATGATCCTATTATTGGGACACAAAATCCAGCAGTCGGTGATCCGGTGGCGGTTAAGAGTAAAGGTGCTCCAAAGAAAAAAAAGAAAGAACCAAAATCTGTCAGGCGATGTGGAAAATGCAACGCTACAACTCATAATGCGAGGACATGTTCCGAGGGTACACAAAAAGCGACAGAACCAATAGTTGATTTGCAGTCGGTGTCGATATCTGATGCTATAAGCCAAATGGATGAGAAAAAGAAAAGAAAAGCAACCTGCAATGTTGACAGAAGTGTGCAAAAGAAGGGTTCACGTCCACCGATACACCGTGGCGCTAAGGCCACAGTGACAACACAAGCAGACACAAATGGATGTTACAATCAAATGCATTTCCAAGCACAGATGGATGTTACAGGCACAAGCAGACATTTAAATGCAATGTGTGGAGTTCAACCTGTTATGCCGATGGTACCTCAAATGTTTCAACCAATGCATTTGCAACCCGTATACCCAATGTATGGAATGAGTGTTGGGCAAACTGCAAGTTCGTGCTACGGTATGCTACAACAGAGTGTCGGGCAATCTTCACGTTCGTGCTACAGTCTGCTACAACAAGTTGAAAAGGCTGCTACTGATGATTGA 2715 0.3934 MEHTDESVDVESRDLHSTKGTDTYDLESNADEDDSYSGSSGDERSETESSETGEDASDNIGAAVHSEVNFDSITSDEIRAMEFATVSEAYEFYYRYGKCKGFAIRKASSRIKELDGNKVTQMKQFVCNRHGLREKKHLTRLDRKVEHRRLSRTNCEARFRVQYRKQKDRYVVTAFVECHNHELTPARFVHLHPVYRKISEADKAQIDGLQTRGIRTCHIMGYMIAQKGGYASVGFTKKDLYNYFDKKMRECIKDGDVVASLNYLNVKSSTDPMLYAEYAVDNSNGRMRSLFWADGSSRSDYFCFGDVLAFDTTYRKNKYNYPLVVFSGCNHHSQTVIFGAALVADETTETYKWVLNCFLECMEGKQPKAVVTDGDGAMREAIKQIFPDATHRLCAWHLNKNAVENVKDNPEFLDGFQKAMYSNFTKDEFEEYWSELIKETEVEQHPWVVKTYENRSLWATGYLRDQFFGRIRTTSQCEAVNAIIKTYVRTKGCIFEFMHNFDQVLRDYRNNELEADFKSKFTVPVLTTQLRVIESDAANTYTAEIFKEVKEQILKAGALIVKHKSDHGDTKIYTLTKFCNDTYERKVVFDGTTLQCSCKLFDSRGVPCSHIFYVMKDEHVDHIPRPLVLSRWTKDAKIEYLNNMECNGDVDSNVVEEARFGAYCSAFTSFCKEAAKKNGVYGQILDDIMKLQKKYCINDDPIIGTQNPAVGDPVAVKSKGAPKKKKKEPKSVRRCGKCNATTHNARTCSEGTQKATEPIVDLQSVSISDAISQMDEKKKRKATCNVDRSVQKKGSRPPIHRGAKATVTTQADTNGCYNQMHFQAQMDVTGTSRHLNAMCGVQPVMPMVPQMFQPMHLQPVYPMYGMSVGQTASSCYGMLQQSVGQSSRSCYSLLQQVEKAATDD* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3471 904 MobiDBLite consensus disorder prediction 1 62 - -
Tpr6g3471 904 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 742 IPR031052 GO:0006355
Tpr6g3471 904 ProSiteProfiles Zinc finger SWIM-type profile. 583 619 IPR007527 GO:0008270
Tpr6g3471 904 Coils Coil 900 904 - -
Tpr6g3471 904 MobiDBLite consensus disorder prediction 37 51 - -
Tpr6g3471 904 MobiDBLite consensus disorder prediction 785 805 - -
Tpr6g3471 904 Pfam FAR1 DNA-binding domain 91 184 IPR004330 -
Tpr6g3471 904 MobiDBLite consensus disorder prediction 1 21 - -
Tpr6g3471 904 Pfam MULE transposase domain 307 401 IPR018289 -
Tpr6g3471 904 PANTHER OS02G0262500 PROTEIN 77 742 - -
Tpr6g3471 904 SMART 26again6 594 621 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3471 Tpr-Chr6 37475100 37478819 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr6g3471 MULE 9.4e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3471 - - ccaj:109792835 824.698