Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3468 ATGGATTTTTACTCTTCTGCTGATTTATTTGATATTTCATGGGAAGAAATGTTTTTCTTCAACAACATTGACTCTGATTCTTCATCCTCTAGTGGTGAAATGGATTTACAAGAACCTAGATACAATATTACATACAATGGGAACGTCAAAGAAGAAAATCCACCACCACCACCACCACCACCATTGGTGTCACTTGCTCCAAAAACCCTAAATCCACAACCAACATCATTTAAACGAGAAAAGAGACTCTATAGAGGAGTGAGGACACGACCATGGGGAAAATATGCGGCAGAGATAAGGGACACAACAAGAAATGGTGTTCGAGTATGGATCGGAACATTTGACACGCCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTTTTAACACGAGGATGTAGGGCAATCCTTAATTTCTCCGAACATGTTGTGAAGGAGTCTCTTCAAAACATGAATTTGAAGACATTGTTAAATCGCGATAGCTCGCCCTTATTGGAACTTAAAAGGATGCATGTCTTGAGAACAAGATCTAAGACTTGCACTAAAAAGGCTAAAAGGGATTCCAAGAATGGAGTGTTGAAAAATGCTCAAAATGTGTTGGTGTTGGAAGATATGGGTTCTGAATATCTAGAGCAACTTTTGATGAGTTCTATTTGA 660 0.3894 MDFYSSADLFDISWEEMFFFNNIDSDSSSSSGEMDLQEPRYNITYNGNVKEENPPPPPPPPLVSLAPKTLNPQPTSFKREKRLYRGVRTRPWGKYAAEIRDTTRNGVRVWIGTFDTPEAAALAYDQAAFLTRGCRAILNFSEHVVKESLQNMNLKTLLNRDSSPLLELKRMHVLRTRSKTCTKKAKRDSKNGVLKNAQNVLVLEDMGSEYLEQLLMSSI* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3468 219 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
Tpr6g3468 219 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Tpr6g3468 219 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Tpr6g3468 219 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Tpr6g3468 219 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Tpr6g3468 219 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Tpr6g3468 219 PANTHER DNA-BINDING DOMAIN 72 216 IPR044808 GO:0003700|GO:0009873
Tpr6g3468 219 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Tpr6g3468 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 72 216 - -
Tpr6g3468 219 Pfam AP2 domain 84 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3468 Tpr-Chr6 37459453 37460329 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3468 73 218 AP2-EREBP Transcription Factor Family AT3G23240 51.701 1.18e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g3468 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3468 K14516 - gmx:100818907 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3468 6 37459453 37460329 Tpr1g2663 1 30607763 30608632 PCT
Tpr1g2127 1 22312560 22313298 Tpr6g3468 6 37459453 37460329 PCT