Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3464 ATGAATTTTGATTCTCCTCTCCTCCAAAACCAAAATCAAAACCTTCTATGCTTCCCTCAAAATTCCTTCTCTAATTTCTCTCGGGAATTAGAAGATTTCGTTAATTTCTTCAATGATGACATCAACTTCAACAACGACTCACAATCACAAACCAAAGAATCATTATCATTATCATCAGTCGAATCCAACTCTTCTGGATCCGTACTAAGCAATGAATTACTAGAAGTCTCGTCGAATACAACTTATACACAAATCAAAGAGACACAAACATCGTCATCATCACCTCCACCACTGCCGAGTAAGGAAAGTAACAAAAGGGCATTTAGAGGAGTCAGAAGTAGGCCATGGGGAAAATTTGCGGCCGAGATAAGAGACTCAACAAGAAAAGGGGTTAGAGTATGGATTGGAACATTCGACACGGCTGAAGCAGCCGCTTTAGCTTATGACCAAGCGGCTTTTTCAACGAGAGGTTCATTAGCAGTGTTAAATTTTCCTGAGGAAGTGGTTAGAGAATCACTTAAAGACATGGCTAGTAATTGTAAGCCTTTGGAAGAAGGTACTTCACCTGTATTGGCACTCAAGAGAAAACACATCATGAGAAAAATGTCCAATAAGGTTAGTAAAAATAAGAAAATCAAAAGTGATTATCAAAGTGAGCAAATTCAGATTCAAGTAGAGACCAAAACCAATAGTACAAATTCCCAAAATGTGTTTGAGTTTGAGGATTTGGGTGCTGAATATCTGGAGCAACTATTGAGCTTGACTTATTAG 771 0.3813 MNFDSPLLQNQNQNLLCFPQNSFSNFSRELEDFVNFFNDDINFNNDSQSQTKESLSLSSVESNSSGSVLSNELLEVSSNTTYTQIKETQTSSSSPPPLPSKESNKRAFRGVRSRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMASNCKPLEEGTSPVLALKRKHIMRKMSNKVSKNKKIKSDYQSEQIQIQVETKTNSTNSQNVFEFEDLGAEYLEQLLSLTY* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3464 256 MobiDBLite consensus disorder prediction 84 100 - -
Tpr6g3464 256 Gene3D AP2/ERF domain 107 167 IPR036955 GO:0003700|GO:0006355
Tpr6g3464 256 SMART rav1_2 107 171 IPR001471 GO:0003700|GO:0006355
Tpr6g3464 256 MobiDBLite consensus disorder prediction 84 110 - -
Tpr6g3464 256 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Tpr6g3464 256 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 253 - -
Tpr6g3464 256 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677
Tpr6g3464 256 CDD AP2 108 166 IPR001471 GO:0003700|GO:0006355
Tpr6g3464 256 PANTHER DNA-BINDING DOMAIN 22 253 IPR044808 GO:0003700|GO:0009873
Tpr6g3464 256 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Tpr6g3464 256 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Tpr6g3464 256 ProSiteProfiles AP2/ERF domain profile. 107 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3464 Tpr-Chr6 37390623 37391911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3464 73 253 AP2-EREBP Transcription Factor Family AT3G23240 50.543 1.73e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g3464 AP2 3.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3464 K14516 - gmx:100779524 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3464 6 37390623 37391911 Tpr1g2132 1 22414134 22415210 PCT