Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3446 ATGGCAATGAAGAGACAAAGGAGCAATGAAGAAAGCATAGATTTAGTAAATTGTCTAATGCTACTTTCTTGTCCACAACAAAAAACCATTGAAAATGGTGAATATGAATGTAAAACATGCAACAAAAAATTCTCATCATTTCAAGCTCTTGGTGGCCATAGAGCTAGTCACAAGAGAGTTAAATTATCTGAAGGTGAAGAACTCAAAGAACAAGCAAAATCTCTTAGTTTATGGAACAAACCCAAAATGCATGAATGTTCTATTTGTGGTATGGGATTTTCTTTGGGTCAAGCATTAGGAGGACACATGAGAAAACATAGAACTCTTATCAATGAAGGGGTTTCTTCTATGAATGAAATTATTGCAAAAATTCCAATTTTGAAGAGATCAAATAGTAAGAGAGTTATGGGATTGGACTTGAATTTGACACCTCTGGAGAATGATGATTTGATGATGTTTGGAATGAAGTCACCCATACCCCTAACACCAATTCCTCTTTCTTTGTTCTGA 510 0.3471 MAMKRQRSNEESIDLVNCLMLLSCPQQKTIENGEYECKTCNKKFSSFQALGGHRASHKRVKLSEGEELKEQAKSLSLWNKPKMHECSICGMGFSLGQALGGHMRKHRTLINEGVSSMNEIIAKIPILKRSNSKRVMGLDLNLTPLENDDLMMFGMKSPIPLTPIPLSLF* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3446 169 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 158 - -
Tpr6g3446 169 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Tpr6g3446 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Tpr6g3446 169 PANTHER ZINC FINGER PROTEIN ZAT5 3 158 - -
Tpr6g3446 169 SUPERFAMILY beta-beta-alpha zinc fingers 35 106 IPR036236 -
Tpr6g3446 169 Pfam C2H2-type zinc finger 84 107 - -
Tpr6g3446 169 Pfam C2H2-type zinc finger 35 59 - -
Tpr6g3446 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Tpr6g3446 169 SMART c2h2final6 84 106 IPR013087 -
Tpr6g3446 169 SMART c2h2final6 35 57 IPR013087 -
Tpr6g3446 169 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Tpr6g3446 169 Gene3D Classic Zinc Finger 32 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3446 Tpr-Chr6 37234450 37235256 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3446 3 160 C2H2 Transcription Factor Family AT2G37430 46.552 5.23e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g3446 zf-C2H2_6 3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3446 - - aprc:113870747 217.238