Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3444 ATGAAAAGACAACGGGATATAGAAGGGTTAGAAAGCATAGATTTAGCAAATTGTCTAATGATGCTCTCTTATCCCCAAAAACAACAAAACAATAAACCAAATCAAAAAAGTTTTGGGCCAATGGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCATTTCAAGCACTTGGTGGCCATAGGGCTAGTCATAAAAGATCAAAATTTGAAGGGGATGAACTCATCAAAGCAAATGCATTGACTTTGGGAAATAAACCCAAAATGCATGAATGTTCCATTTGTGGTCAAGAATTTTCTTTGGGACAAGCATTAGGTGGACACATGAGAAGACATAAAGCTATCATCAATGAAGAGGTTGTTTCTTCAACGGAAAAAGTTGTGAAGTTACCAATTTTAAAGAGATTGAATAGTACAAGGATTATGTGCTTGGACTTGAACTTGACACCATTAGAGAATGATTTGAAGTTATTGTTTGGAAAGATGGCTCCCAATCTTGATGTTTTAGTCTGA 513 0.3509 MKRQRDIEGLESIDLANCLMMLSYPQKQQNNKPNQKSFGPMEYECKTCNKKFSSFQALGGHRASHKRSKFEGDELIKANALTLGNKPKMHECSICGQEFSLGQALGGHMRRHKAIINEEVVSSTEKVVKLPILKRLNSTRIMCLDLNLTPLENDLKLLFGKMAPNLDVLV* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3444 170 Gene3D Classic Zinc Finger 73 131 - -
Tpr6g3444 170 SUPERFAMILY beta-beta-alpha zinc fingers 43 112 IPR036236 -
Tpr6g3444 170 Gene3D Classic Zinc Finger 42 68 - -
Tpr6g3444 170 Pfam C2H2-type zinc finger 43 67 - -
Tpr6g3444 170 Pfam C2H2-type zinc finger 90 114 - -
Tpr6g3444 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Tpr6g3444 170 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Tpr6g3444 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Tpr6g3444 170 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 166 - -
Tpr6g3444 170 PANTHER ZINC FINGER PROTEIN ZAT5 12 166 - -
Tpr6g3444 170 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Tpr6g3444 170 SMART c2h2final6 43 65 IPR013087 -
Tpr6g3444 170 SMART c2h2final6 90 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3444 Tpr-Chr6 37203999 37204717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g3444 1 168 C2H2 Transcription Factor Family AT2G37430 48.023 1.69e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g3444 zf-C2H2_6 1.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3444 - - gmx:100806997 236.884